result

Gene information

Detail information of g360884


Location
GeneChrStartEndStrand
g360884Scaffold_71921:HRSCAF_45500710483451051405+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_010250883.14.2e-108PREDICTED: trihelix transcription factor GTL1 isoform X1
SwissprotQ39117.11.1e-79Trihelix DNA-binding protein GT-2
trEMBLA0A8J5FSA02.5e-110Trihelix transcription factor GTL1

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G76890.240.044e-91 333AT-GT2;GT2Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag360884.t1
Allium fistulosumAfisC5G00135
Allium sativumAsa6G06883.1
Arabidopsis thalianaAT1G76880.1
Oryza sativaLOC_Os02g43300.1; LOC_Os03g02240.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF13837.3Myb_DNA-bind_4Domain7616273.31.4e-20
PF13837.3Myb_DNA-bind_4Domain46855581.93e-23

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000902Pcell morphogenesis
GO:0000904Pcell morphogenesis involved in differentiation
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0001558Pregulation of cell growth
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0051726Pregulation of cell cycle
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006275Pregulation of DNA replication
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0007154Pcell communication
GO:0009653Panatomical structure morphogenesis
GO:0009888Ptissue development
GO:0008150Pbiological_process
GO:0008156Pnegative regulation of DNA replication
GO:0008361Pregulation of cell size
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009414Presponse to water deprivation
GO:0009415Presponse to water
GO:0009605Presponse to external stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0009991Presponse to extracellular stimulus
GO:0010026Ptrichome differentiation
GO:0010035Presponse to inorganic substance
GO:0010090Ptrichome morphogenesis
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010564Pregulation of cell cycle process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0010948Pnegative regulation of cell cycle process
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0033554Pcellular response to stress
GO:0070887Pcellular response to chemical stimulus
GO:0030154Pcell differentiation
GO:0030308Pnegative regulation of cell growth
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031668Pcellular response to extracellular stimulus
GO:0032502Pdevelopmental process
GO:0032535Pregulation of cellular component size
GO:0032774PRNA biosynthetic process
GO:0032875Pregulation of DNA endoreduplication
GO:0032876Pnegative regulation of DNA endoreduplication
GO:0032989Pcellular component morphogenesis
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0040008Pregulation of growth
GO:0042221Presponse to chemical
GO:0042631Pcellular response to water deprivation
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045786Pnegative regulation of cell cycle
GO:0045926Pnegative regulation of growth
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048468Pcell development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051052Pregulation of DNA metabolic process
GO:0051053Pnegative regulation of DNA metabolic process
GO:0051128Pregulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071214Pcellular response to abiotic stimulus
GO:0071229Pcellular response to acid chemical
GO:0071462Pcellular response to water stimulus
GO:0071496Pcellular response to external stimulus
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090066Pregulation of anatomical structure size
GO:0090304Pnucleic acid metabolic process
GO:0090329Pregulation of DNA-dependent DNA replication
GO:0090558Pplant epidermis development
GO:0090626Pplant epidermis morphogenesis
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000037Pregulation of stomatal complex patterning
GO:2000038Pregulation of stomatal complex development
GO:2000104Pnegative regulation of DNA-dependent DNA replication
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0104004
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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