Gene information

Detail information of g361844

Location

Gene	Chr	Start	End	Strand
g361844	Scaffold_72036:HRSCAF_455122	170959	171924	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	ONK81869.1	1.1e-23	uncharacterized protein A4U43_C01F33700
Swissprot	Q9SZL6.1	3.4e-14	Protein PIGMENT DEFECTIVE 191
trEMBL	A0A5P1FWV4	7.8e-24	Transcription termination factor MTERF6, chloroplastic/mitochondrial

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G38160.1	57.68	1e-112	402	pde191	Mitochondrial transcription termination factor family protein

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g361844	AT4G38160.1	319	133	2	4	320	7	325	57.68	1e-112	402
g361844	AT4G38160.2	319	133	2	4	320	7	325	57.68	2e-112	402
g361844	AT4G38160.3	319	133	2	4	320	7	325	57.68	4e-112	400

Ortholog group

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	5	112	52.2	3.8e-14
PF02536.11	mTERF	Family	105	316	163.2	6.5e-48

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003723	F	RNA binding
GO:0005739	C	mitochondrion
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006399	P	tRNA metabolic process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008033	P	tRNA processing
GO:0008150	P	biological_process
GO:0009507	C	chloroplast
GO:0009536	C	plastid
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0016070	P	RNA metabolic process
GO:0034470	P	ncRNA processing
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034660	P	ncRNA metabolic process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0071704	P	organic substance metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network