Detail information of g368594


Location
GeneChrStartEndStrand
g368594Scaffold_72888:HRSCAF_4559748235693796-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020257733.14.9e-303helicase-like transcription factor CHR28 isoform X1
SwissprotQ94BR5.11.5e-192Protein SNF2-RING-HELICASE-LIKE 2
trEMBLA0A5P1FH653.5e-303Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G61140.152.440.0 780EDA16SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag368594.t1
Allium fistulosumAfisC2G00004
Allium sativumAsa5G00175.1
Arabidopsis thaliana
Oryza sativaLOC_Os01g57110.1; LOC_Os01g57110.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily514838200.72.4e-59
PF00097.22zf-C3HC4Domain87290824.02.3e-05
PF00271.28Helicase_CFamily1034113666.52.2e-18

Gene Ontology
AccessionOntologyName
GO:0000724Pdouble-strand break repair via homologous recombination
GO:0000725Precombinational repair
GO:0008152Pmetabolic process
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006281PDNA repair
GO:0006302Pdouble-strand break repair
GO:0006310PDNA recombination
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006974Pcellular response to DNA damage stimulus
GO:0008150Pbiological_process
GO:0009292Pgenetic transfer
GO:0009294PDNA mediated transformation
GO:0009987Pcellular process
GO:0033554Pcellular response to stress
GO:0034641Pcellular nitrogen compound metabolic process
GO:0043170Pmacromolecule metabolic process
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044764Pmulti-organism cellular process
GO:0045003Pdouble-strand break repair via synthesis-dependent strand annealing
GO:0046483Pheterocycle metabolic process
GO:0050896Presponse to stimulus
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0071704Porganic substance metabolic process
GO:0090304Pnucleic acid metabolic process
GO:1901360Porganic cyclic compound metabolic process

KEGG pathway
KONameEnzyme IDPathwayPathway ID
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Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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