result

Gene information

Detail information of g369294

Location

Gene	Chr	Start	End	Strand
g369294	CHR6	315035063	315038848	+

Sequences

CDS

Protein

Gene

>g369294.t1
ATGCTAGCAATTTCACCTCTAACAAGTTTGAACAATGGTGATGCAACAGAAGAGTTTGCACTTGATCAAGAAATCAGCTTTGATGACTTGTTTGTAGGATTTGACGACCTCCCCGATCTTGAAATCGATCCTTGTGACATATTTGCTGATTTTTCATTTACTAGTGGCGAGGATGGAGATGGAAATAACAAGGATTCTTCAGAAGAGAATGGAGATAAAAAAGAATGTTTTGAGGAGTCGAGTAAAGAAGAGGCAGAAGTCGTGAGTGCGAGAACAAAAGAAGATGAAAAGAAATCACCAAGAAAAAAGTCATCAACCAAAAAGTTGTCTCAATCTAAGAAGAAAACTAAGGTGAAATCATATATTCTTGGGTTTCTAGTATTCTTGGTTGCACTGATTCTATTTTTTAATTCAAGTGGATTGCATTTGATATTTTTTTTTTCTTTTAACTTTGGCTGATATGTGAAAATTGAGCATTTTACAACCAACTGTCTACTACCAGTAGTTATTTGCAATTTAATTAAAAATTAATTAATCGAAATATTTTAACTATATATACTCTACATATCTGAAAGTAAATATATAATAATTGATTGTTGTGTTTTATACATAGGTGGATTGGACGCCTGAGCTGCATCGGAGGTTTGTTGAAGCAGTGGAGAAACTAGGATTGGAGAAAGCGGTGCCATCGAGAATATTGGAGCTTATGGGCATAGATTGTCTCACTAGACATAATATTGCAAGCCATTTACAGGTATTTTAATTCTACATCCATGAATAAACGAACTTTCAATTTTCTTCAAGTACATAGTTCTTGACTGAATATTCTAAAATATCAATCTTGAAGTATTACTTATGTAGCTCACTGGTGTAATTTCCAGGTTTAACTATGCAGCTCTTCTAAAATATAAACTTTAAATAAACTTCTGAATTTAAAGTTGTATTTCGAAGGAGTTCATTCATGTGGTTATTTTTTATTGTTCAGCTTTGAATACAATTTATTTAGTGTACAAAATACTAACATACGTGCTCTTTAATTATGATTAATACTTGGACAAATCTTTACTCAAGATTTTATTTGAGAAATATCTTATGTTCGTTGTTGAATCTAATTTCCTGAAGGATTTTTTTTGGCGTTTTGGCGCATAATATGTTTGGTAGCAATCTCTCTCATGCATCCTTAAAATAGAAAAATTCATGTTTATGTTATTGGACAATACTGAGTATAGCATGTACATGATGATCAAGCAACAAGGAACCATAAACAAAGATTGAATTATATCCAGTAGTTAAGTGTCTACATATATTTCTCATGCACATTATTTTCCTACACATATATAAAGGTTACAACCAAGATTTAACTGTGAATGAAATGCAGAAATATAGGTCACACAGAAAACACATACTAGCAAGAGAGGCAGAAGCAGCAAGGCTGGGTCAGAGAAGGAATATGTACGCAACCGGTGGAAACCATAGAGGAGGTGTCGACCCTACGATGATAAGCACAAAGCCTAATTGGGCCCCATCACCACAGCCGATGGTTGGATTTCCTCCTACGACACACCATCATTATTTGCAAAATTATAGGCCGTTGCATGTGTGGGGTCACCCTCCAGCAGTCGAACATCCGCCTCAGTTACTTTTTGTCTGGCCTAGACCGCCTTATTGGCAACATAGTCGGGCATATCAAAGGGTATGCATACCTATCAAAATAACTAGAGTAGGGGTACAGTTAGTATTTAAGAAGCTCAATGATTCAAAGCACCAATGGGATTCAGCCATTTTTAGATTGCTAAAATGTACTGGTACTCTGAACCATTGAGTTTGTGATCTAATGGCCCAGAATATTTGAACGTATGGTGCTTTGGTTTTTCACCAAAACATATGTATAGGCCTATACGGTTAATGACTAACAAAAATATTTGTTTTATGCAGTCCTTGGCACAAGGAACACCATGCTTCCCTCCTCCTCCTCTATTGCCACCAACGGTACTGATTTTTCTCTCATTTTCTGCTTGATTTAACAGTGTCGAGAGAAAACATTTTTTTTCTTCAACTAAGTGAATTTGGTTTTACTTGTGTTGAATTGTCTACTCTGGCGTAATACCAGTACTGTGATAATCTTTCATATATGAACCACCACACTTGTTAAATGTTAGTAATATATGTACAAGTTTACAACTAATATATTGCATTAAGTGTGCTGCTAAGGGGATTCCTTCTGTGATATTGCACCAGAGTAGGCGATCAAATCCTTTTTTGTATGCCCATCACAATAATATTTATTACTATCCTAGATGATTTTATTTGACTGGACTATAATTATATATGCAGGGATTTTCTTCTCCATCTGTTACTGGAATTCCTCCACATCGTATGGTTAGACCACCGCTGCCGCAATATGGAGCTCCTTTGAAAACTCACTCGACCTCACATGTTCAACTTGACGTTCAACCTGTAAGTGAATCTCATACATATATACATGTGTACGTGCACGCAGGCATGAGTGTGCTCGCGCGTGTACACACACACATAGATATAGACACACACACACACCAAGGTTTGAGAACTTGGTTTCGGTCTCGGTTTCGCTCATTTGAAATTTTCTTGGTTTCGGACGATTTTGGAAGTTTCGGTTCGGTCCTAGATTCGATTTTCAATGATTTGTTGATGAAAACATGGTAAAGATCTTTGTAAGTAGAACAACAAATTAAATTTTGTCCACCCCTAGTCAAATTAAAATTAATAGCAGATTCAACGGAAGAATAAATTCGATTTTACGGACTGGGTATGCTGATTTTTTGATTTCGATTTTTTTAGTAAATCCTAACCGAAACCGATTTTTTGCTTCAGTTTTGGTTCGCTAACCATCGATACCGGTACGGTATCACCGAAATTTCAGGGTACCGTCTGATACCTCAAACCTTGATATATACACATATATACGTACATACACAATACACACACACATACATACATACTACACACATATATGACATACATATATACATACATACTACACACATATATGACATACATATATACATACTACACACACGTTTGTATGTATGTATGTACAAACACACATACGCACACGTGTTTGTGGCGATCATTAAGTTTGAAACAGACGAGCAAAAATTCTTTTGCAAAGGCATATTTGATAATGAGTACAGGCTGTTTTTTGGGGGAGTTTTAGTTAGATTATCCATTTCAGTAATGTTGCATTCATGGGGTACATAGAGTAAGGCGACACATGAGTAAGAGCCAGATTGTATGGCATCAATTCATACAGCATGTTTCTGGTTTTAGCCTTTGGAATTATCACGAGGAGGCAATACAAATTAATTGCACTAACATACAAATTGTTCCTATGGTTGTATCTTGATTTTTACCCCGTTTACCCTTTTTCTTTGACACTATTATCAGTTATTTTTGATGTGTTAGATTATGTCTCAAAAGTTTTAGTTTAAATATCAAGAACCTACATCCGAATCTGAAAATTTCAGATATCATTATCAGATGCATTGACAATTGATAAATCTGAAGATAGTAAAGGAAAATTTTGATTCAACATATTTTTTTTTTACATGAATTAAGGATGGTGAACATTAATCGACAATTTTCACTATAATCCAGTCAAATGAAAGCATAGACGCAGCAATAGGAGATGTATTAACAAAGCCATGGTTGCCGTTGCCACTTGGATTGAAGCCGCCATCATTGGATGGTGTAATGGCTGAGCTACACAAGCAAGGTGTTGCTAAAGTTCCTCCGACCTGTGTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247841.1	1.3e-79	LOW QUALITY PROTEIN: probable transcription factor GLK1
Swissprot	Q5Z5I4.1	1.5e-66	Golden2-like protein 1
trEMBL	A0A7I8KXK2	1.1e-72	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20570.1	44.36	6e-63	238	ATGLK1;GLK1;GPRI1	GBF's pro-rich region-interacting factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g369294	AT2G20570.1	381	156	12	32	376	57	417	44.36	6e-63	238
g369294	AT2G20570.2	397	156	13	32	376	57	433	42.57	4e-60	228
g369294	AT5G44190.1	397	154	12	13	374	39	384	39.55	9e-53	204

Ortholog group

Species	Genes
Allium cepa	g142222.t1; g369294.t1
Allium fistulosum	AfisC6G00156; AfisC6G00550; AfisC6G01029; AfisC6G01282; AfisC7G02598; AfisC8G00316
Allium sativum	Asa3G02821.1
Arabidopsis thaliana	AT2G20570.1; AT2G20570.2; AT5G44190.1
Oryza sativa	LOC_Os01g13740.2; LOC_Os06g24070.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	118	167	33.1	4.1e-08

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006996	P	organelle organization
GO:0008150	P	biological_process
GO:0009657	P	plastid organization
GO:0009658	P	chloroplast organization
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009909	P	regulation of flower development
GO:0009910	P	negative regulation of flower development
GO:0009987	P	cellular process
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0010638	P	positive regulation of organelle organization
GO:0016043	P	cellular component organization
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0033043	P	regulation of organelle organization
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048519	P	negative regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048831	P	regulation of shoot system development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051093	P	negative regulation of developmental process
GO:0051128	P	regulation of cellular component organization
GO:0051130	P	positive regulation of cellular component organization
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051193	P	regulation of cofactor metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0090056	P	regulation of chlorophyll metabolic process
GO:1900055	P	regulation of leaf senescence
GO:1900056	P	negative regulation of leaf senescence
GO:1901401	P	regulation of tetrapyrrole metabolic process
GO:1901463	P	regulation of tetrapyrrole biosynthetic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000024	P	regulation of leaf development
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2000242	P	negative regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110
GO:1905622

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network