result

Gene information

Detail information of g370466

Location

Gene	Chr	Start	End	Strand
g370466	Scaffold_73159:HRSCAF_456245	18306	20995	+

Sequences

CDS

Protein

Gene

>g370466.t1
ATGGACAACAAAATAGCCACGTACTTTGGTCTAGGGTATAGTGAAGAAGGAGGTTCATCATCATCTAGCCTATCTCATCTCATGAACATTATGCCTCCTCCTCCATCTAACCACTTCAACTTATTCAATCTTAACAATCAACAATATTCCAAAAATGACCATCAAGACTTTGAAATCAGCAGCAGCAGCAATAACTTGATCAAGGCAAAAATCATGTCTCATCCTCATTACCCGAAACTCCTTTCTGCCTACATCAACTGCCAAAAGGTGTCACTTTTTGCTACCATGGTATATTACTCTATGTGTTGTTTTACAAACCCTAACGCTAGCACGATTTGTTTGATTCTATTTTGTGAAGGTAGGTGCACCTCCTGAAGTTGTTGCTAGGTTAGAGGAGGCATGTTCATCTTCACTAATGATTGCAAGAGCTGCTAATTCTTCCTCTTCTTCGACTTTGAATTCAGATCCGGCACTTGACCAGTTCATGGAGGCTTACTGTGAAATGCTCATTAAATATGAGCAAGAGCTCTCAAAACCAGTTAAAGAAGCCATGATTTTTCTTTCTACCATTGAAGCTCAATTCAAATCTTTAGCACTTTCTACTACTTCACTCAACCAAGGTTTTTGAATTATTATTTTTTTCTTCTCAATAATTCATTATTTTTTTGTTCGTTTTTGGAAAGTGTAGATATTTAGGTTGTTAAATATGTTTGATGGGGACTAATTAGGTATTGTTTTATGAATCTTTACAAATTAAATAATGATTATCAATAGCTAATAACTCAGCTACGATTAGATACTTTTTACTACTAGCCTATATATGTAGTTAAATTCCAAAGCTATATATTAGAGATACAGAGTAGATTGTTTAACTTAATTTGAAAAGAATACTCTACTTTCTGTCCATGTGTTTTTTGTTTTTCGAAAGAATAAAAGAAGAAATACTACTTGGAACGAAGACCTTACTAAATTATGGTGAAAATTTCGATGAATTTATGGCTAACAATTCACTGACTATTTTCGGTTTCCCTCTTTTATATTCCAATTCTAGATATTGTTAGATTTTGAGAAAGAGTTGAATGAAGAACTTGGATAAAATGTTATCGTTTACTGGGTTGATCTTTACCTTATACTAATGTAAAATTTGCATTTAATCACAAGCTTACATCGCTAATATTTGTACTATATTGTAAAAAAATTATTGTTAAAACTTAAAGTTGTTATGCTCGTTGTCTTCTTTCTGCATATATTTTCTGCAAATTATGTCAATGGTTTTTTAATTGATAATAAAAGTTGATATGAACTAAATTTTAAAAGATATTTGTTGACTGGAGCTCAAACTTTAGCTTTTGAAATCAGAGCTTTTATCTCACTGATTCATGCTTATTGAATATCATTTTCAATTGAACGTAAACTATTGATTGATAACGGTTTTGACTAAAAGTTCGTTGTTTTCAGACACAAGTTAGGATTTGTTATTATTGTTTGTTTTGTTTTGTTTTGTTTTTGATTTTTCTCGAAGTGTATTTTTCATTGTTTACATTTAGATTGTGTCATCTACGTTTTAATATTGCATTGTTGCATTTCAATTGCACTGTGAAATGAAATAGGTTAATACTCATCGAAACATATGACTGTACACATGATATATGTGACATTCATACGATATAATTTGCAATACATAAAATGGTTGACTAAGAAATTGTTTTGTTTTTCCATACCTAACATCTATGATTCAGGTATTCTAGAACAGTTAAGGGCAACGTATTCCGAATATGAAATTTACGATCTGATTCAGATTCACTGGCGTTAAAACAAAATCTAGTTTTGCATGATAAAGCTACTAGGTACCATGAATTGTATCTGTTCTCACTTGTATATAAACTGACATCCCGATTCACAAACTTGTTTTTCATGTTTTCTAGCTATAGCCAGGTTGTTGAAAGATGGTGGAGGTTCGGTAACTCAAACTTCTTTACATCATTTAATCTTACAGTCTGAATTTGTTAGCAAGACATACTATATAGTTGACAAACATCCTATAATCATATATTATGTTTACTAGCATATAGCAAAGGGTATATATTTACCATGTTTTAATCGTAGAAACATTGTTGAATTATTTATGCAGTAGTGGGTACTGGTGAAACAGAAAGAAGAATGAATGGTACGACATCAGAAGACGACATGGAATGCGAATATCCAATAGACCCCTTGGCTGAAGACAGGGAACTCAAAGGTCAACTGCTGCGCAGATACAGTGGTTACCTAGGCAACCTCAAACAAGAATTCATGAAAAAGAAGAAGAAAGGGAAGCTGCCTAAAGAAGCAAGACAGCAACTTCTTGACTGGTGGACTCAGCATTACAAGTGGCCTTACCCTTCTGTAATTTCCTTTTCTCATCTTCATCACTTTTAAATACACTCATATGTTACATTAATGTGCGCTTGAAAATAATTGACATATCGAAGGAGTCTCAAAAGGTGGCGCTAGCTGAATCAACTGGGCTTGATCAGAAGCAGATAAACAACTGGTTCATTAACCAGAGGAAGAGACACTGGAAGCCCACTGATGAACTTCAAACTTATGTGGTCATGGGAGATGCATCGCATCCGCACTATTTCTTGGAGAATAATATTGGGTTTGCTAATCCTTACCCTTTTGATATTGCTCCTACTACCCTTATCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK70249.1	9.3e-111	uncharacterized protein A4U43_C05F31790
Swissprot	P46608.1	1.3e-96	Homeobox protein SBH1
trEMBL	A0A5P1F0B6	6.7e-111	Ubiquitin-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62360.1	67.66	2e-91	332	BUM;BUM1;SHL;STM;WAM;WAM1	KNOX/ELK homeobox transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g370466	AT1G62360.1	269	78	7	67	333	121	382	67.66	2e-91	332
g370466	AT4G08150.1	254	92	6	67	311	134	379	57.09	1e-70	263
g370466	AT1G23380.1	251	117	4	63	311	81	324	49.80	1e-62	237

Ortholog group

Species	Genes
Allium cepa	g370466.t1; g396453.t1
Allium fistulosum	AfisC5G05542; AfisC6G02724
Allium sativum	Asa0G05087.1; Asa8G04023.1
Arabidopsis thaliana	AT1G62360.1
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03790.10	KNOX1	Family	67	105	83.4	5.8e-24
PF03791.10	KNOX2	Family	123	167	70.8	5.1e-20
PF03789.10	ELK	Domain	210	231	40.3	2.1e-10
PF05920.8	Homeobox_KN	Family	250	289	62.1	3e-17

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0010496	P	intercellular transport
GO:0003006	P	developmental process involved in reproduction
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0005856	C	cytoskeleton
GO:0005911	C	cell-cell junction
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006810	P	transport
GO:0046983	F	protein dimerization activity
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0042802	F	identical protein binding
GO:0009058	P	biosynthetic process
GO:0009308	P	amine metabolic process
GO:0009506	C	plasmodesma
GO:0009690	P	cytokinin metabolic process
GO:0009691	P	cytokinin biosynthetic process
GO:0009791	P	post-embryonic development
GO:0009889	P	regulation of biosynthetic process
GO:0009908	P	flower development
GO:0009934	P	regulation of meristem structural organization
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010497	P	plasmodesmata-mediated intercellular transport
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010817	P	regulation of hormone levels
GO:0015630	C	microtubule cytoskeleton
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019827	P	stem cell population maintenance
GO:0022414	P	reproductive process
GO:0022603	P	regulation of anatomical structure morphogenesis
GO:0030054	C	cell junction
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0034754	P	cellular hormone metabolic process
GO:0042445	P	hormone metabolic process
GO:0042446	P	hormone biosynthetic process
GO:0042803	F	protein homodimerization activity
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0044237	P	cellular metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048440	P	carpel development
GO:0048467	P	gynoecium development
GO:0048509	P	regulation of meristem development
GO:0048608	P	reproductive structure development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051179	P	localization
GO:0051234	P	establishment of localization
GO:0051252	P	regulation of RNA metabolic process
GO:0055044	C	symplast
GO:0060255	P	regulation of macromolecule metabolic process
GO:0061458	P	reproductive system development
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0090567	P	reproductive shoot system development
GO:0097159	F	organic cyclic compound binding
GO:0098727	P	maintenance of cell number
GO:0099402	P	plant organ development
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network