result

Gene information

Detail information of g370605


Location
GeneChrStartEndStrand
g370605Scaffold_73174:HRSCAF_4562606451373032+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020276718.13.7e-133increased DNA methylation 1-like isoform X1
SwissprotF4IXE7.16.0e-56Repressor of silencing 4
trEMBLA0A5P1EA012.6e-133PHD-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT5G58610.141.994e-69 260PHD finger transcription factor, putative

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag370605.t1
Allium fistulosumAfisC6G06183
Allium sativumAsa8G01152.1
Arabidopsis thalianaAT5G63900.1
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00628.26PHDDomain49753830.03.3e-07

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0000118Chistone deacetylase complex
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000785Cchromatin
GO:0000790Cnuclear chromatin
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001012FRNA polymerase II regulatory region DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001085FRNA polymerase II transcription factor binding
GO:0001103FRNA polymerase II repressing transcription factor binding
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003678FDNA helicase activity
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0003712Ftranscription cofactor activity
GO:0003714Ftranscription corepressor activity
GO:0042393Fhistone binding
GO:0042623FATPase activity, coupled
GO:0003824Fcatalytic activity
GO:0004003FATP-dependent DNA helicase activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0004386Fhelicase activity
GO:0004407Fhistone deacetylase activity
GO:0005488Fbinding
GO:0046872Fmetal ion binding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0005654Cnucleoplasm
GO:0005694Cchromosome
GO:0043231Cintracellular membrane-bounded organelle
GO:0005813Ccentrosome
GO:0005815Cmicrotubule organizing center
GO:0005856Ccytoskeleton
GO:0016887FATPase activity
GO:0016570Phistone modification
GO:0006325Pchromatin organization
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006464Pcellular protein modification process
GO:0006476Pprotein deacetylation
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0008026FATP-dependent helicase activity
GO:0008094FDNA-dependent ATPase activity
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0008270Fzinc ion binding
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0015630Cmicrotubule cytoskeleton
GO:0016043Pcellular component organization
GO:0016462Fpyrophosphatase activity
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016569Pcovalent chromatin modification
GO:0016575Phistone deacetylation
GO:0016581CNuRD complex
GO:0016787Fhydrolase activity
GO:0016810Fhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016811Fhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0017053Ctranscriptional repressor complex
GO:0019899Fenzyme binding
GO:0019213Fdeacetylase activity
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019538Pprotein metabolic process
GO:0030334Pregulation of cell migration
GO:0030336Pnegative regulation of cell migration
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032392PDNA geometric change
GO:0032508PDNA duplex unwinding
GO:0032879Pregulation of localization
GO:0032991Cmacromolecular complex
GO:0033558Fprotein deacetylase activity
GO:0035064Fmethylated histone binding
GO:0035601Pprotein deacylation
GO:0036211Pprotein modification process
GO:0040012Pregulation of locomotion
GO:0040013Pnegative regulation of locomotion
GO:0042826Fhistone deacetylase binding
GO:0043167Fion binding
GO:0043169Fcation binding
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043412Pmacromolecule modification
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044430Ccytoskeletal part
GO:0044446Cintracellular organelle part
GO:0044451Cnucleoplasm part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046914Ftransition metal ion binding
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051270Pregulation of cellular component movement
GO:0051271Pnegative regulation of cellular component movement
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0070035Fpurine NTP-dependent helicase activity
GO:0070491Frepressing transcription factor binding
GO:0070577Flysine-acetylated histone binding
GO:0070603CSWI/SNF superfamily-type complex
GO:0071103PDNA conformation change
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090545CCHD-type complex
GO:0090568Cnuclear transcriptional repressor complex
GO:0097159Forganic cyclic compound binding
GO:0098732Pmacromolecule deacylation
GO:1901363Fheterocyclic compound binding
GO:1901564Porganonitrogen compound metabolic process
GO:1902494Ccatalytic complex
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:1903756Pregulation of transcription from RNA polymerase II promoter by histone modification
GO:1903758Pnegative regulation of transcription from RNA polymerase II promoter by histone modification
GO:1904949CATPase complex
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000145Pregulation of cell motility
GO:2000146Pnegative regulation of cell motility
GO:2001141Pregulation of RNA biosynthetic process
GO:0140030
GO:0140033
GO:0140034
GO:0140096
GO:0140097
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.