result

Gene information

Detail information of g372734

Location

Gene	Chr	Start	End	Strand
g372734	Scaffold_73476:HRSCAF_456562	1240314	1242284	+

Sequences

CDS

>g372734.t1
ATGCCCCAAACAGATCGCCTCTTCTCCTCCTTCTCCTTCCTTCGCCACCTCTCCACCAAACAAAACGCCTCTCGATCCCTGTCCAAACTCAAAAACATCAACAACCGCTACCGCTCCCGCGCCCTATGCGCCGCCAGGCTCGCGCTGATCGAGTACCTCCATTTCACCCGCAACCTCCCCTTCTCCTTCTCCGAGCAAATCGCCTCCAACTCCCCTTTCTCCCTCTCCTCCTTCCTCTCCCACGCCCCCTTCCCCTCCGACTCCACTCCCTCCTCCTTCCCCTCCTTCATCCGCCGCTTCCTCTCCTACCACCCCATCGACGAGTTCGACTTCTTCTCGGAGTCCATTGGCACCCACGTCGGGAGCAATTCCCTCTTTCTTTCCGACAACCCTCGCCTTGTCAATTCAGTGCTGAAACTGTTCAGGTTCGGCTTTCCTTTTCCTAAACTTGGCCTGCTGCGTGATGTTTTTCAGGAAGACGCAGACGAGTTGACTATGAGGCTGAGTGCCTTCGAGGAGTTAGGGTTTAGACGCATCTGCGTGATTGGTGCCTGCCTTGCGTTTCCTTGGACTTTGAAGCCTAACATGGAGAGGAAAGCTGGGTTATTGTTTGATGATTTGAAGGTTTTACTGCAGGATTGCGAGTCGGATGATGCAGATTTTGTGTTTGAGTTATGTAGGAAGTTCGGGTTGTTTTATGATAGTGGGGTAGAGGTTGGAAGGATGGGGGAGATAATGTTGAAGAATTATCATTTCTTTCTGGAGGTTGAGGAAGAAGTTCTGAAGTGGAATTTGAGGTTTTTTGTGAAATTAGGGGTGAGGAAGGAGGACATGGAGGTGTTTGTTTTGAATCATATGGATATTCTCAATATCCAGTTAGAAAGATTGGAGATTGTAGTGCCGGATGTTTTAGTAAGGTTTTTAGATTTAGATGAAGATCAAGTTGATAAGCTTCGTAAGATGTATCCTCATGTAATGGGGAAGAATAAGTTAGGGAATTTACTGGGAATTCTGAAAGCATTGGATTTAGATAGAAGATTTAATGATGGAAGTGTGAAAATTGATTTCCATTGTTTGAAGGTTTTGGGCAATGAATTTAACAGTAACTCGTGTACTAATAATGATAGGACGGAGGTAGAATATTTAGAAGTTAAAGAAGGTATCAAGTCTAATTTGATGATTCAACGTTTTGATAATAAGCTTGAATTTTTGTCTAGTGTTGGTTTCGGGAGAAATAAGATTGCAGCAAAGATTGCATTAGCATTATACTGCACTAGAGATCGATGGCAGGAGAGATTTGATTGCCTTATTGGGTATGGAATTGAATATGTTGATGTTTGTAGACTGATAAGTACAAACCCTAAACTTTTATATCAAAGTATAGACCAGATTGTTGAGAAAATGAATTATACATTTCATGATATGGATTTTCAATCAGATTGTTCAAAAAGTTATACCTCTATTAAGTACAAAAGGATAATCGAACATTTTGATAAGCTTGGATTTTTGTTTAGTATAGGGTTAGAGGGGAATAAGATTACATCAAACCTTGCACTAAAACTACAAGGCACAAGACATGAATTGCAAGAGAAGTTTGATTGCCTTATTGGTTTTCAAATTAAACACGATGATTTCCGGAGAATGATAAGTGCTACCCCCAAACTTTTCAATCAAAGTGCAGAACAGATTCACGATAAAATGGATTTTCTTTGCAATGAATTGGGTTATCCAATAGATTATTTAAATAATTTTCCAGCCTATTTGTGTTTTGATTTGGAGAACACGATAAAACCGAGATATAAGGTTATGAATTGGCTTAAAGAAAAAGGATTAGTGAAGAAAGAGATTTCTCCTGCGAGACTTCTCTCCAACGATGAGAAGTGGTTAATTAATTATCTCTACGACATTCATCCAGCTGCTCCTAAACAGTGGATCGAAACATTTTCATCAAAGAATCGTCATCATGGTTAG

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008779561.1	6.7e-113	transcription termination factor MTEF18, mitochondrial
Swissprot	Q9M219.1	1.8e-78	Protein SUPPRESSOR OF HOT1-4 1
trEMBL	A0A8T3BRJ8	8.8e-115	Transcription termination factor MTEF18, mitochondrial

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60400.1	34.51	7e-63	238	SHOT1	Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g372734	AT3G60400.1	481	284	9	14	475	6	474	34.51	7e-63	238
g372734	AT3G60400.1	179	104	1	474	651	373	551	41.34	5e-34	142
g372734	AT4G19650.1	151	99	2	495	644	418	567	33.11	6e-20	96.3

Ortholog group

Species	Genes
Allium cepa	g142232.t1; g204271.t1; g276583.t1; g372734.t1; g410041.t1
Allium fistulosum	AfisC1G02170; AfisC7G02557; AfisC7G02586; AfisC7G05605; AfisC7G05608; AfisC7G05618
Allium sativum	Asa3G00679.1; Asa3G00681.1; Asa3G00686.1; Asa6G06009.1; Asa7G02162.1
Arabidopsis thaliana	AT3G60400.1
Oryza sativa	LOC_Os07g22670.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	234	477	27.5	1.3e-06
PF02536.11	mTERF	Family	519	625	56.7	1.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0042254	P	ribosome biogenesis
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003727	F	single-stranded RNA binding
GO:0005739	C	mitochondrion
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006996	P	organelle organization
GO:0007005	P	mitochondrion organization
GO:0008150	P	biological_process
GO:0008380	P	RNA splicing
GO:0009507	C	chloroplast
GO:0009536	C	plastid
GO:0009657	P	plastid organization
GO:0009658	P	chloroplast organization
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0022607	P	cellular component assembly
GO:0016043	P	cellular component organization
GO:0016070	P	RNA metabolic process
GO:0019843	F	rRNA binding
GO:0022613	P	ribonucleoprotein complex biogenesis
GO:0022618	P	ribonucleoprotein complex assembly
GO:0032502	P	developmental process
GO:0034622	P	cellular macromolecular complex assembly
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0042255	P	ribosome assembly
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043933	P	macromolecular complex subunit organization
GO:0044085	P	cellular component biogenesis
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0065003	P	macromolecular complex assembly
GO:0070925	P	organelle assembly
GO:0071704	P	organic substance metabolic process
GO:0071826	P	ribonucleoprotein complex subunit organization
GO:0071840	P	cellular component organization or biogenesis
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network