result

Gene information

Detail information of g373810

Location

Gene	Chr	Start	End	Strand
g373810	CHR5	153971067	153977192	+

Sequences

CDS

Protein

Gene

>g373810.t1
ATGTCAAGAGTTGGTCCTATCTCTCAGGACTGGAATCCAGTCGTGATCCGTAAGAAAGCCCCTAACGCCGCCGCCAAAAAAGATGAGAAGGTCGTCAACGCTGCTAGGCGCAGTGGTGCTGAGATCGAAACAGTACGAAAAGGTATGTCTTTATTGTTTATTATTTTAATTTGTTTAATTTCATGATTTGCGTTCGCTTAGGGTTTTCAGTTAGATTATAGGGTTTCAATTTGTTTTCAGGAGTCTTAGGATTTTGCAGTGATTTTATTATAATAGGCGACTGAAACCTAAATATATGTCATCATAATATTCATTCTAAAGTTGATGAAACGATATGATACAACGTTTAGCCGGTGACCTTAATCTTGTTGGATAAATTTTAATACAAATTCATTTAGTTTTTATATGCATATTAGTATGGGTTTACTTTGATTTGATTTGGAGAAGTAGAAGGGAAGAGGAAGAAAGGAGGAGGAAATATGAAGTCCCACATGTTTGTACTTGCAGGAGTGTTTGTCTCTTGATATAAAGGTTTGGCACACCCAAATGTTTCTCTTGTGTTGAGTTCACGATTCATATTTCTCTTGTGTTGAGTACATGATTGGTGCATGTTTACACATGCACAGGCATCCAACCGAGCCGGGTCGGGTTTGGGTTCAAAATATGTTTTTGGATAAATTTTGTACAGGCTTTCAACCCAATAGTGCAGGTACAGAACAGTACAATGATCATATTTCTGAACTATTTCTGGTGAATGCATGGTACTGCTTAAGCAGTCATTTTCAGTCAAATGACGCTTCGATTGATAGGAATGGTTTTCTGCCGAGGGATGCACCATGTTATTTACTGAAAATTACCCAATTTCAATTGGCAATGAAATGTTGATATGCTCTTCACAACAACCGGCAATGCGTTGTTGTTTGATTTTAACATTTACAAAGGAGATAATCAAATGGTAGAGCAATCAGCATTCTACTGCCGAGCGCTGACTATTGTGAAGAACATACGTACTTTCGTTGCCATTAGAAAACCGAGTAATTTTCAGTGCTCTTATGGTGCGAATAGTAGTGCTTTTAATCATATTGCATTGGTTTTGATTAGAACATCAGAAAACAAATGAACTGTATTACCATATTAATTTCATATGACTAGAGAAGCATACCGGTTGTGCAATTTTGACAGCAAAGATATATTTTTTTCCCATTTCTTTGGCTCCTCTTGGAAGTTTTTTTATACCGGTTTTGACTGGTTTTGGACGGCTATATTTCAGGTGTTGTAATAACCCTTGCTTTTAATTTTTTTTCATAATGGTAATTGTTGGTTATAAAACTAGTGAAAACCAATGTAGTGTAATTTTAATGGCAATTCTCAATTCATCAAATTTGGGTGTTGGGAAAGGTTCAAACTTTTTTTTTTCAATTGTAGCCCTACTAATCATATTAGAAAATTAATCTTCAGAGAACTAAATAATAAATATAATGGTATATATGTAATACTACTTTAGTGGAAAACTCGTTCAACCTGTGTATGTTAAACTCTCAAGCATGTATTGATCGGCTATAACAACATTTCATGTAAATCAATCAAAATCGCTATGATCATTTACGGCCAAAACCGGTACTCTTAAAACCTCTCATAACCGTTAGTACAAAACTCTCAAGCGGAGCCTTAATTAATGAGAGAGTTTCATTTGACTTATTTTTTGAACACTGTTACTGAATAATTATGGTAGAAGATGTGAGTTATAATTTGATTATTATACCATCTGTTCACTTTTCATATAATCACATCTTAGTTCATTTTCAGATCACCATCGGGAACAAATCTGAGTTTCAATTTGATAAAATATACAATTGAAAAGAAAAGAATAAAACTGTGAAAAGAAACTGTAAAAAAATGACCTTGAAAAAAAAGTACAGGAGAAAAAGTCCATCAAAAAAACATGAAGAGGCAGCATATCTTAAAAGAAAGTGGCAAGATATATTTAGGGTTAAGAAAAACCTCATGAGTGTAGAAACTGATGGTGGTATATCATTTAGATTATATGTTACTTAACTGGACCATGTAATTGTCTTTATTTATTATTATTTTATTTTAAGGTTTGCTTAGATGGCTATTGCATTATTGGGCCGTTGGGTTAAAGTTTTTATTTGTTAAAAGAAAATTTAATTGCTGGGATAACTAATTTATTGGAGTAAATGTAAGGTTTGATTATAATTCATTAAAATTGCCCGTTGGAATTTAAGATATATATATATATATATATATATATATATATATATGGATACATTGTTGTCAAAAATCCTAAAATCCTACGATTTAAATCCCGATTCGGATCGGATCTCTCCCTTAACGATTCGATTTACATTCCGATCCAAACTTAGTAAACACTGCAGATTAAAAATCATTCTACTTATATACTAACATACTTAGTATGTTTATTTGGATTCAAAATTCAAAATACAATGTTTTCAAAATAGATAAAAATATAATAAGAGAGAAAATTGAGTTTTATGTTTAATTGTAAAAGTTCAAACGTCAAAATCAATTTCAAATTGTGTGCAAACCTTCAAATACGAATTTTTTGAATCTACGATTTACGATTTGAATCTCGTTTCGATTTAAAGTTTGAATTTTATGATTTACGATTTAAATCCGTTTTGAAAACATTTTATATATATATATATATATATATATATATTTGAAATTAACAATTGACCGGATTTACCAAAACTTGAGAGGCCTAAATCCCTATGGGATCACCACCTTATACCTTGATTTCAGTCTTTCAGGATTCTTGTTATAGACTAATTGTTTATATAATGATGTTTAGAAGAGAACGTAATATGATATGCATATAATGTCATACATTGTTCTGTAGAAACGTTGATTCAAATACTAAAAGTAGCTTGCTATTTGGGACCTCTAATTGTACAAAGTTATCAGTAACAGGACAATGATTTTCGTTCTTTTATTGACGTTTATGGCTCATGGTGATAACTTTCATCTGACAAATTCAAAACGTTGAATCAGCTGTGTTCACACCATTTGTACTTCTGTTGGTTGATTATATATGTTTTGGTAAATGATCTCTAATCGTTCTTGAAATCATGTAGCTGCTGCTGGTATGAACAAAGCTGCTTCTAGTAGTACATCTTTGAACACAAGGAAGCTTGCAGAGGAAACAGAGAACCTGACCCGTAAGTATTTTACCTTGCATGCTTTTAATGGTGCACTCTTTGCCTTTTTTCTGTATAAGAAGTTAAATGATTGATTTTCATGTTTTATACTGGAAACGTGTAAATCAATGCAGTTCAGAATTCGGATACCATACTTTTCTTTTCACATATAATGCTTAACCAAGTATGATGCTTAATTAACCGAGTCTATTTTTTGTGTTATTGAATTCACTATTCTATGCATGCTTTTGAATTTCTGCTTTATTATAACGTTGGCAATGCTATTGGCAATGCTATCTGCAACCAATGTCTTATAATTGTTTGTAAAATATGTGAGAAATTTTCATTATAAATACTAAACTAGATGGTATGATAAATACTAAGCAACTCCCGTATATACCCAGCACTAGTACAAATTTTATACACATCCATTACCTCCCTTTCCATGATCATGTGAATGAAGAAAACATGATTTTTGTTTTTATTTTATTTTTAGACCTATTTCGGTTCAGTTTCATATAACATCCTTGATGATGGAAAATGAGATTAATACTTACAATTATATTTTAACTTGATCTTGGTAGGAATATTTATGCAGCCAAGGGCTCTTCTTTATGTATAGCTTCAACGATTACAAAATTATAAATTATTGGAACTTTCATCGGATGCATTTCATATTGCATTTGGCTCACCTTTTTATCGACTAGCTTCATTATCTGTAGATCAGTATGTATTTGTACTTAGAAATTTGTTACAGATAATGGTAGTCACCAGTAGAATTTTGAACAAAATATAGTGCATGGAAACTTTGGTGGTTATGTGATCTGCTTGTCCGTTTTTATAAACTAGAACATTGAAACATGCGCACAAACTTGAACCTAATCTGGCAACGTTGATGTATGTGTTTCCAGTCAACCTTGTATACTGTACATTGGTTTTTACTAGGCCAATCTTACAAGGTAGGCTGCAGCTAGTAGCCAAGTAATATGTTATCCATCATTGTTTGGATGTAATAATTCCTTAAGAACTGGGATAACATCAGAATTAACGATTCTAGAGTACTTTGATTTATTGCATGTATGCTGACATGATAATTGATATAATGTATCCATATAAAAGAGTTCTACATGTATAGTGCACTAAATGGAATTTGTAAATACATATTATGCAAAATAATATGCAAAAATATATGTTAAAGTTAAAACCTAAAGTAAATTGATAAAGCATTTTTACAGGTTTGTAACTTACAATGTCTGGATATTTATATGTTTGTATTGGGTATGTTTAAAAGTTTGGTACTTTTTGTATATCTTCAAATAGGGACCTGAGATTGCTTACTACTTGCGCTGGAAAAAATCATGAATTTTATTACTGTTGAAGCTTACAGGAAATTGTTAAAAAAAAGCCATGACTAAAATTTTGATGTTTAAGCCTCTTAAGATAATAGCTCATTTGAAAAATCACGTTGTTTCACATAAATTTATGATGCATGTTCCTTAGATGCACAAAACACCCCCCGAATTAGCAAACCCTTCAAATTTTGAACCAACACCGAATTTCCCTTCAAACTTGTTGTTTATGTTAGCATTTTTTTGTTTAATTTTTGGTGTAATTTGAAGTTCTTTGTATTAAAATGAAACTAATTAGACCAAATTTGGGAAAATTTGGATATGGACATTAAGTATTGAAGAAGAAAAAGTGCCGAGGGAGAAAAATAGTCCTAAAAGAACCATTGCTATATTTAGGCTTTTTTTTAATTACATTGAGAAAAATAAATGAAAATTAGAGTTTTTTTTCTTCTGAAATTTATTTATTTTTAATACCAAGATGTTTTAGATAATTTGCCCTGAAATTTATTACTGTGCATGACCAACCTATTTCATCGTAGTCACCCTATACCTACATAGACACAGGATAGACATAAAAGTAAAAATAATAATCTAATTCATCAAAGTAATTCATACTAACATTGTATGTTAAAATATACTTTACCTTTATTAACTATCCGTCTATTCGTTTAATATAGCTTTTAAAAAACAGGTTTTTTATACTTTATTCTTTTATATTCATATTCAAGTTTTTACCTTCACTTTGTGCTTGCTTCCAGAAGTTAACTTTCCGACATAAATTTTGATTTAAAAGCGCCGCTTCATAAAGTACATGGAAGCTGTTTGTAAAAAATAAACGAATTTCAAAACTTGTAAGGAAAGTGATTTACAAAGTACTTAAGAATTATAGTAATGAAATGGAAATCCTTATAAAGGGAAATGCCAATGTCTGCCCACTGCGCTCTCATGGTAAGATGGTATAATTACATAAGTAACCTCTATGATTTTGGAACTTTTAGAGGGTAAATTTGAGTATCAAACTATTATAGTTTGTCTATATTGTGTCATCATTTAATGATCGTTGATGTGCACCCAAATTACGGCAATGTTCCCAAATGTTATTGTTAAAATCTACATTAGATTGATCTCATGTAATTCTGTGACCTGTTTCCCTTAGATGAGAGAGTTCCAAGTGAACTGAAGAAAAACATTATACAAGCTCGAACGGACAAAAAGCTCACTCAGTCCCAACTTGCTCAGGTGTTGTATTTACTACTACTTTGCATGCATTTTGATTCAGGCTTTTCTTGAAACTAATTCGATGTTAATGTTTATTTCATTTAACGTGTCACAGCTTATCAATGAGAAGCCGCAGATCATACAAGAATACGAGTCAGGAAAAGCTATTCCAAATCAGCAGATAATCTCCAAACTTGAAAGAGTGCTAGGAGTGAAACTGAGGGGTAAGAAGTAATTAAGCTTTGTATGCCGAAAGCTTGGTCAGTTTAAGAAATGTTGCCTGTGGAAACTATATAAAAAGTTTAGTCAGTTCAAGGAACTTCAGTCATGTGGTTGTTTGCTATGCCCCTTGCAGTTTGTTTATGTACATATTTTCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021688123.1	1.9e-57	multiprotein-bridging factor 1a
Swissprot	Q9SJI8.1	1.1e-54	Multiprotein-bridging factor 1a
trEMBL	A0A6A6MMB3	1.3e-57	HTH cro/C1-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G42680.1	80.85	1e-62	235	ATMBF1A;MBF1A	multiprotein bridging factor 1A

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g373810	AT2G42680.1	141	27	0	1	141	1	141	80.85	1e-62	235
g373810	AT3G58680.1	141	29	0	1	141	1	141	79.43	4e-62	233
g373810	AT3G24500.1	139	69	1	5	141	7	145	48.92	1e-32	135

Ortholog group

Species	Genes
Allium cepa	g373810.t1
Allium fistulosum	AfisC5G02245; AfisC7G01346
Allium sativum	Asa3G03773.1
Arabidopsis thaliana	AT2G42680.1; AT3G58680.1
Oryza sativa	LOC_Os08g27850.1; LOC_Os08g27850.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08523.7	MBF1	Family	9	79	75.8	2.5e-21
PF01381.19	HTH_3	Domain	88	138	47.2	1.6e-12

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003712	F	transcription cofactor activity
GO:0003713	F	transcription coactivator activity
GO:0003723	F	RNA binding
GO:0003729	F	mRNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K03627	MBF1; putative transcription factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network