result

Gene information

Detail information of g374580


Location
GeneChrStartEndStrand
g374580Scaffold_73658:HRSCAF_456744527752528645-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020675788.19.1e-31putative GATA transcription factor 22
SwissprotQ9SZI6.19.5e-17Protein GNC-LIKE
trEMBLA0A835VB252.9e-31GATA-type domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT4G26150.140.789e-26 113CGA1;GATA22;GNLcytokinin-responsive gata factor 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag374580.t1
Allium fistulosumAfisC5G05075
Allium sativumAsa5G02538.1; Asa6G05115.1; Asa6G05119.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00320.24GATADomain13516857.94.8e-16

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0000977FRNA polymerase II regulatory region sequence-specific DNA binding
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001012FRNA polymerase II regulatory region DNA binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001085FRNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001228Ftranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0008152Pmetabolic process
GO:0001678Pcellular glucose homeostasis
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0006366Ptranscription from RNA polymerase II promoter
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005667Ctranscription factor complex
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006351Ptranscription, DNA-templated
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0007568Paging
GO:0007623Pcircadian rhythm
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0009058Pbiosynthetic process
GO:0009059Pmacromolecule biosynthetic process
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009639Presponse to red or far red light
GO:0009657Pplastid organization
GO:0009658Pchloroplast organization
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009735Presponse to cytokinin
GO:0009736Pcytokinin-activated signaling pathway
GO:0009739Presponse to gibberellin
GO:0009740Pgibberellic acid mediated signaling pathway
GO:0009743Presponse to carbohydrate
GO:0009746Presponse to hexose
GO:0009749Presponse to glucose
GO:0009755Phormone-mediated signaling pathway
GO:0009756Pcarbohydrate mediated signaling
GO:0009757Phexose mediated signaling
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009909Pregulation of flower development
GO:0009910Pnegative regulation of flower development
GO:0009937Pregulation of gibberellic acid mediated signaling pathway
GO:0009938Pnegative regulation of gibberellic acid mediated signaling pathway
GO:0009966Pregulation of signal transduction
GO:0009968Pnegative regulation of signal transduction
GO:0009987Pcellular process
GO:0010029Pregulation of seed germination
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010114Presponse to red light
GO:0010151Pchloroplast elongation
GO:0010167Presponse to nitrate
GO:0010182Psugar mediated signaling pathway
GO:0010187Pnegative regulation of seed germination
GO:0010255Pglucose mediated signaling pathway
GO:0010380Pregulation of chlorophyll biosynthetic process
GO:0010467Pgene expression
GO:0010468Pregulation of gene expression
GO:0010476Pgibberellin mediated signaling pathway
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010646Pregulation of cell communication
GO:0010648Pnegative regulation of cell communication
GO:0044212Ftranscription regulatory region DNA binding
GO:0016043Pcellular component organization
GO:0016070PRNA metabolic process
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0018130Pheterocycle biosynthetic process
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019438Paromatic compound biosynthetic process
GO:0019725Pcellular homeostasis
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0023051Pregulation of signaling
GO:0023057Pnegative regulation of signaling
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032774PRNA biosynthetic process
GO:0032870Pcellular response to hormone stimulus
GO:0032991Cmacromolecular complex
GO:0033500Pcarbohydrate homeostasis
GO:0033993Presponse to lipid
GO:0034284Presponse to monosaccharide
GO:0034641Pcellular nitrogen compound metabolic process
GO:0034645Pcellular macromolecule biosynthetic process
GO:0034654Pnucleobase-containing compound biosynthetic process
GO:0042221Presponse to chemical
GO:0042592Phomeostatic process
GO:0042593Pglucose homeostasis
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0043610Pregulation of carbohydrate utilization
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044249Pcellular biosynthetic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044271Pcellular nitrogen compound biosynthetic process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045944Ppositive regulation of transcription from RNA polymerase II promoter
GO:0046483Pheterocycle metabolic process
GO:0048511Prhythmic process
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048581Pnegative regulation of post-embryonic development
GO:0048583Pregulation of response to stimulus
GO:0048585Pnegative regulation of response to stimulus
GO:0048731Psystem development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0048878Pchemical homeostasis
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051193Pregulation of cofactor metabolic process
GO:0051194Ppositive regulation of cofactor metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051241Pnegative regulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0055082Pcellular chemical homeostasis
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071322Pcellular response to carbohydrate stimulus
GO:0071326Pcellular response to monosaccharide stimulus
GO:0071331Pcellular response to hexose stimulus
GO:0071333Pcellular response to glucose stimulus
GO:0071368Pcellular response to cytokinin stimulus
GO:0071370Pcellular response to gibberellin stimulus
GO:0071396Pcellular response to lipid
GO:0071495Pcellular response to endogenous stimulus
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080050Pregulation of seed development
GO:0080090Pregulation of primary metabolic process
GO:0090056Pregulation of chlorophyll metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097659Pnucleic acid-templated transcription
GO:0099402Pplant organ development
GO:1900140Pregulation of seedling development
GO:1901360Porganic cyclic compound metabolic process
GO:1901362Porganic cyclic compound biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901401Pregulation of tetrapyrrole metabolic process
GO:1901403Ppositive regulation of tetrapyrrole metabolic process
GO:1901463Pregulation of tetrapyrrole biosynthetic process
GO:1901465Ppositive regulation of tetrapyrrole biosynthetic process
GO:1901576Porganic substance biosynthetic process
GO:1901698Presponse to nitrogen compound
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1902326Ppositive regulation of chlorophyll biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990837Fsequence-specific double-stranded DNA binding
GO:2000026Pregulation of multicellular organismal development
GO:2000028Pregulation of photoperiodism, flowering
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000242Pnegative regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090693
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
-----

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.