result

Gene information

Detail information of g375410

Location

Gene	Chr	Start	End	Strand
g375410	CHR4	246675179	246679286	-

Sequences

CDS

>g375410.t1
ATGCAAAAAATTCCTGAAGCTCGCCGTCCTTTTCAGCTCCATACCTTTTCCCTCCCCGTCTTACGCTTCCTCTTTGCGGCCAATCTGAAGAAATCTCATCTTGACGATCAGATGGAGACCTGCCATATAGAAGAAGAAGTGCGCATCCCATTTCCAATATTTAAAGATATCAGGAGGTATTACTGTGAATATTGTGGAATTTGCAGATCTAAAAAGTCACTTATTAGATCTCATGTGCTCTCCCATCATAAGGACGAAGTAAAGAATGAAGAAGCAAAAGACATTGAAACAGAAACAGTACACAAGGAGGCAAAAAATACTTGTGAAGAATGTGGTGCAAGTTTTAGTAAACCGGCTCATCTAAAGCAACACATGTTAAGTCATTCTCTACAGAGGACTTTCAGTTGTCCAGTTGAAGATTGTCATTTAAGCTATAGAAGGAAAGACCACTTGAACCGTCATCTGCTCAAGCATGAAGGCAAACTCTTCAATTGTCCTCTTGAAAAATGCAACAAGACTTTTGCCTTCCAAGGAAATATGACCAGGCATGTGAAAGAAATGCATGTCGATGACAGTGGTGACGACGATGGATCTTCTTCAGAGGGTGAAAAAAAATATGTCTGTTCAGAAGAGGGTTGTGGTAAAGCGTTTAAATATGCATCGAAACTGAGGAAGCATGAAGATTCCCATGTGAAATTGGAGTATGTGGAGGTTATTTGTGGGGAACCTGAGTGTTTAAAGAAATTTACGAATGCTGATTGTTTGAAAGCCCATAGACAATCCTGCCATCAATATATTTTATGCAAGGCATGTGGGACCCAACAGCTTAAGAAAAATTTCAGACGTCACTTGCGTATACATGAAGAATATAGTGAGACGGAGAGGATCAAATGCAGTTTCCCCAACTGCCAGTACACATTTACAAAGAGATCAAACTTAAATAAACATGTAAAAGCCGTGCATGAAGAGCTCAAGCCATTTCCTTGTCGGATCTCCGGATGCAATCAAAGATTTCCTTATAAACATGTTCGGGACAATCATGAAAAATCTGGAGTTCATGTTCATGTACTCAGGGACTTTGTTGAAGCTGATGAGCAATGGAGATCGCAACCGAGAGGTGGAAGGAAAAGGAAACATTTCTCGGTTGAAATGCTAATGCGCAAAAGGGTTGCGCCTCTTAGCCAAGATGCTGCAATTGATGATGGAACTAATTATTTGAGATGGTTGCTCTCCTACAATGAATAG

Protein

Gene

>g375410.t1
ATGCAAAAAATTCCTGAAGCTCGCCGTCCTTTTCAGCTCCATACCTTTTCCCGTTCTAAGGCTACTATGATTGGGCTTTAAGCAACTGAAAGTGCACCTTTATTTTAAACCAGACCCGATTATTATACCTGCTGCACTGTGGGAAAATAGCACTTCATGAATTAGGGTTTTGACTTTTGAGTCCCCGTCTTACGCTTCCTCTTTGCGGCCAATCTGAAGAAATCTCATCTTGACGATCAGGTATGAAATTCTCGCATAATCTACTATCTAAAAGCCTGTAATAATGAATATAGCAGCAAGCTTACAAAGTTTAAACGACTTAATTCACTCCTATGCTGCACTCAAATTTATGTTCGTCCATTTTTATGTAGATGGAGACCTGCCATATAGAAGAAGAAGTGCGCATCCCATTTCCAATATTTAAAGATATCAGGAGGTATTACTGTGAATATTGTGGAATTTGCAGATCTAAAAAGTCACTTATTAGATCTCATGTGCTCTCCCATCATAAGGTACGTCACTTTGTCCTGAAATAACTGTAGGAAGTTGTTCGAAAAATGTTCTACCTTGGATAAATCAAAGCAACTATCGATATCTGACCAAATGATAATGGTTATACATGAAGTTAAATCTCCGTTACAGCTTAAAAACACTTTAATGATATTTGTTGACTGACAATGGTTATTAAATCAATTTGTTGTGACTGTCATGTTAATTGGATAAAACGTTAAATGCATAGGACGAAGTAAAGAATGAAGAAGCAAAAGACATTGAAACAGAAACAGTACACAAGGAGGCAAAAAATACTTGTGAAGAATGTGGTGCAAGTTTTAGTAAACCGGCTCATCTAAAGCAACACATGTTAAGTCATTCTCTACAGGTAATTTTTTTTTTTGCTAAACTAGATGTTGACGTTCAGATTACGAGGCAATGTAAGTGATGGTAGGTGGATATTTAGCTGAAAAACTGGGCTGAGCAAATCAAAATGCAGAATGGTGTGGCCTAGGGTTTTGTTGTCGGGTATAAATAAGTAAATAATTTCCATTGCATATGCGCTTTGAATCACATTCCATATTTGTGCAAAACAATATTCATCTAACCGACGGTTGCTTTAATTCTTACTAGAGTATTGCAAATAACAAACTCTGGAACTCCAAATTTAACTGAATTCCCTTTGTTTTTGGTATCATGAAAGTACAAGGTCCTTACTACGGACACAGTAATCAAATAAAAAACCAGTGAATAAAAATGATCATGTATGCCTATTGTGTAAATTGTTGAAATGAATTTATAGGTTTTTATACTTGTTTTTTCCCCCTTTCTGTTAGCGTTATTATGATCAGTACCATCATTAACTTGAGTCACACAACAAATACGAAGTTACTCCAACAACTACTAGTGGTGGATTGTTGACTTAAATTATTACAAACTGCCTGGATTAAAAAGCAAGATTTTGCAGGATTATAGGTTTATGATTGTATGAACTCTGGTGTTAACGTGTGAAGCATTGGATCCCATATACAGAACTCCAAAATGCGTTAGAGGCATGATAGACTTTTCCTTGAATGGACTAGTATCAGGTGGGGTGACCCCCTGAGAAGCTCCATCAAGAAATGCCTCTCACATCACGCCATGCCATTGTCGAGGTTTGCACATTTTGACTTAATTACTCTATTACTCTGAGCTGCATATATAATTTGATGTTTCTATTTTTAGTGCACTACTCTTATTTGATATCTGTCAGGGTTGCAGTTTGAGACTTACGGCACTGCCGCAAAATAGTCTGCCTCTTCTTTTCTTCTGTGGCACTCTATATACTATCAACCTTTTCATACACTCAATAGTTACTTAGTTTTGAAACAGATAATTGTATTGTTCATAGTTAAAATTGCACATACCTACCGAGTTAATCTTAAATTACTTGACACAGCATTTGTTTAGTCTATGCACAAAAACACATATACTTAGGGCCTGTTTGCTCTGAATGTATTATGTACAGTAGCATCCAGGTTTAATATCTAAGGGATTATGCTCTGTTAAACCTTAATTTGTTATGCAATATTGCTGATGGGATCTATTACTTGCAGAGGACTTTCAGTTGTCCAGTTGAAGATTGTCATTTAAGCTATAGAAGGAAAGACCACTTGAACCGTCATCTGCTCAAGCATGAAGGCAAACTCTTCAATTGTCCTCTTGAAAAATGCAACAAGACTTTTGCCTTCCAAGGAAATATGACCAGGCATGTGAAAGAAATGCATGTCGATGACAGTGGTGACGACGATGGATCTTCTTCAGAGGGTGAAAAAAAATATGTCTGTTCAGAAGAGGGTTGTGGTAAAGCGTTTAAATATGCATCGAAACTGAGGAAGCATGAAGATTCCCATGGTATGCTAATATTAATGTTAATTATGACTTGTACGATTTAATAATCACGAAGAGTCCTGGTCTTATTTAAGGCGGTAGAACAACTAAATTTTGCGCCCATTTTAGATTGTTCCACTAACTTCTGTCTCTTGTTTGTGATTGGCATAATATTATTCACATGAGCTATAGGTAGCTTGTGATGTTCATTTCTTCCACCTTCAGTGGACAAAACAAGTTCATATATTTTATTTTGCTAGTCATCATCAGCTTCCCTTAATCCGTGTTTGCATTTTATCTTCTACCTGTCATGATACATTGACCTTTTATAAATGAAAATATCTTCATGTAACACACTTTGCTGTCTTAAATGCTCTAACGTACTTTTCTAAGGTTTTGAAATGTAAGCTTTTATAACATATGATAAATTAGCTTAAGTCTGATCAAACTTGAATTATGTATTATGCCTATATGTACCACTTTGAAAATTCAATTAGATCATGCCCTATCATCATGTAACTGGGGTGGATAATTTTTATATTTGATAAGCTAATCTTATTCACCCACCCAAATCTCAAATTGTAAAGCTGTGCTCATTCGCCTTTGTTCAGCTACTATAAAATTCTTGCATTTTAACAGTGAAATTGGAGTATGTGGAGGTTATTTGTGGGGAACCTGAGTGTTTAAAGAAATTTACGAATGCTGATTGTTTGAAAGCCCATAGACAATCCTGCCATCAATATATTTTATGCAAGGCATGTGGGACCCAACAGCTTAAGAAAAATTTCAGACGTCACTTGCGTATACATGAAGAATATAGTGAGACGGAGAGGATCAAATGCAGTTTCCCCAACTGCCAGTACACATTTACAAAGGTATGTTGTATGTATCTTTAGGCATAGTTATATTTTTTTTTTCCAAACTACTCTGGGTAGATCATCAATAGACCATTTTTTTGGCTGTTCATAGAGATCAAACTTAAATAAACATGTAAAAGCCGTGCATGAAGAGCTCAAGCCATTTCCTTGTCGGATCTCCGGATGCAATCAAAGATTTCCTTATAAACATGTTCGGGACAATCATGAAAAATCTGGAGTTCATGTTCATGTACTCGTAAGTTCGCCTTTACGTTGATTTATATTTTAACTCTATAGTATACAAGTTTTTTTGGCACATGCGACACGTGCATATAAAATTACTTTTATATAATAATTTGACATTATGAAGTTTCTTCTATATATATAATTTTAATGAACAAAAATTGAAAAATATAAAGGAAAACAAATATGTACTTCTGCTGAAACTAAAAGTTAAACTTGTTACCCGACTTATATATCAAAATTATTGTCCAAAAGTAAATGTTAATGTTTGTTTAGAGCGAGATTCAAACTCCTGATTGCGATTGGACCAAAAAATTGCAAATCAATTGCAATTATCGATAAAGAAAGATGTTTTCGGAATATCTTAGTAAATTTGTAAACAAGCAGGGAAATAACCGGCTGATATTCTTTTGAATGTAGAACCAATTTATGATATTAGTATTAATCAAGTATTCCATTTCATTTCATAACAGAGGGACTTTGTTGAAGCTGATGAGCAATGGAGATCGCAACCGAGAGGTGGAAGGAAAAGGAAACATTTCTCGGTTGAAATGCTAATGCGCAAAAGGGTTGCGCCTCTTAGCCAAGATGCTGCAATTGATGATGGAACTAATTATTTGAGATGGTTGCTCTCCTACAATGAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268699.1	3.1e-108	transcription factor IIIA-like isoform X1
Swissprot	Q84MZ4.1	5.3e-68	Transcription factor IIIA
trEMBL	A0A5P1EJL5	2.3e-108	Transcription factor IIIA

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G72050.2	51.11	2e-108	389	TFIIIA	transcription factor IIIA

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g375410	AT1G72050.2	405	145	5	44	397	4	406	51.11	2e-108	389
g375410	AT1G72050.1	309	150	4	109	397	11	318	44.66	3e-69	259
g375410	AT4G06634.1	131	78	3	134	264	79	194	29.01	7e-07	52.0

Ortholog group

Species	Genes
Allium cepa	g375410.t1
Allium fistulosum	AfisC4G00969
Allium sativum	Asa4G00937.1; Asa4G05049.1; Asa5G01944.1
Arabidopsis thaliana	AT1G72050.1; AT1G72050.2
Oryza sativa	LOC_Os02g02424.1; LOC_Os05g03020.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13894.3	zf-C2H2_4	Domain	107	128	19.1	0.0015

Gene Ontology

Accession	Ontology	Name
GO:0042254	P	ribosome biogenesis
GO:0000182	F	rDNA binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003690	F	double-stranded DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003723	F	RNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008097	F	5S rRNA binding
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019843	F	rRNA binding
GO:0022613	P	ribonucleoprotein complex biogenesis
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0042273	P	ribosomal large subunit biogenesis
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0043565	F	sequence-specific DNA binding
GO:0044085	P	cellular component biogenesis
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0071840	P	cellular component organization or biogenesis
GO:0080084	F	5S rDNA binding
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09191	GTF3A; general transcription factor IIIA	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network