result

Gene information

Detail information of g379527


Location
GeneChrStartEndStrand
g379527Scaffold_74251:HRSCAF_45733711680171188701-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020264245.10.0e+00LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ0D9R7.20.0e+00OsARF7a
trEMBLA0A6I9RRF90.0e+00Auxin response factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G19220.177.800.0 694ARF11;ARF19;IAA22auxin response factor 19

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag379527.t1
Allium fistulosumAfisC6G04732
Allium sativumAsa8G02548.1
Arabidopsis thalianaAT1G19220.1
Oryza sativaLOC_Os02g04810.1; LOC_Os06g09660.1; LOC_Os06g48950.1; LOC_Os08g40900.1; LOC_Os08g40900.2

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02362.18B3Family13023172.12.4e-20
PF06507.10Auxin_respFamily256339116.44.5e-34
PF02309.13AUX_IAAFamily960104734.02.5e-08

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0009653Panatomical structure morphogenesis
GO:0008150Pbiological_process
GO:0009314Presponse to radiation
GO:0009416Presponse to light stimulus
GO:0009605Presponse to external stimulus
GO:0009606Ptropism
GO:0009628Presponse to abiotic stimulus
GO:0009629Presponse to gravity
GO:0009630Pgravitropism
GO:0009637Presponse to blue light
GO:0009638Pphototropism
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009785Pblue light signaling pathway
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009987Pcellular process
GO:0010015Proot morphogenesis
GO:0010033Presponse to organic substance
GO:0010101Ppost-embryonic root morphogenesis
GO:0010102Plateral root morphogenesis
GO:0010311Plateral root formation
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022622Proot system development
GO:0023052Psignaling
GO:0030522Pintracellular receptor signaling pathway
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0042221Presponse to chemical
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0048364Proot development
GO:0048366Pleaf development
GO:0048367Pshoot system development
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048527Plateral root development
GO:0048528Ppost-embryonic root development
GO:0048731Psystem development
GO:0048827Pphyllome development
GO:0048856Panatomical structure development
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051716Pcellular response to stimulus
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071214Pcellular response to abiotic stimulus
GO:0071478Pcellular response to radiation
GO:0071482Pcellular response to light stimulus
GO:0071483Pcellular response to blue light
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:0099402Pplant organ development
GO:1901363Fheterocyclic compound binding
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0090696
GO:0090697
GO:0090698
GO:0104004
GO:0140110
GO:1905392
GO:1905393

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14486K14486, ARF; auxin response factorEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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