result

Gene information

Detail information of g38172

Location

Gene	Chr	Start	End	Strand
g38172	CHR3	203578068	203581703	+

Sequences

CDS

>g38172.t1
ATGAAGCAATTCATGGCAAGAGTTAATTTTCTAGTTCTAATAATAAGTCTTGCCTCCATATTTTCAGTTGTTAACAGTGCAACTGATTCTAATGATTTAGTCATCATCCGAGAATTTCTCAAGGGAATACAAAATCCAGAAACACTTAACTGGGAAGGAGATGATCCATGTGGTTCTTGGAAATTTATATTCTGTCATGGTACTCGTATTACTCAAATCCAAACAAAGGATATCAATTTACATGGCAGTCTTCCTCAAAATCTGAACAAACTTTCAGAGCTAACTGATCTTGGTCTTCAAAACAACAATTTGTCTGGAACATTACCGTCACTTTCTGGGTTGTCAAAACTTAAGCGTGCCTTTTTTGGAAACAATAAATTCGACACAATTCCTTCTGATTTTTTCACAGGACTTGAAAGTTTGCAGGTTATTTCTTTGGAGAGAAATCCTTTGAATGCAACTACTGGTTGGGTGTTGCCTTCTGACCTAAAAAGTTCTATCCAGTTAACCAATTTATCTTTATCCCAATGTAATCTTGTAGGCAAAATGCCTGACTTCTTAGGAAGTATGAGTTCATTGATGCTTCTTGATATGTCTTATAATCGTCTGTCTGGTGAAATACCGACTAGTTATTCTGGACTGCCATTGCAAATATTGAAGCTTAACAATCAGGATGGATCTGGACTTAGTGGAGGTATTGATGTTATAGCTTCTATGACACAACTAAGTCTTGTTTGGATTCATGGAAATGCTTTTACCGGTCCTATACCCGAAGCTATAGGAGCATGCACATCTTTAAAGGAATTTGTGATCAATAATAATAAACTTGTTGGACTTGTTCCTACCAATCTGACAACATTGCCTAAGCTTGATATGCTGCAATTGCAAAATAATAACTTAATGGGTCCGATTCCAAAGGTTTCTTTCACAAACTTCACCTTTCTTCCAAATAAGTTCTGTCAATCCTCTCCTGGTATGCCATGCTCACCTCAAGTTACTGCCCTTTTGAATTTTCTTGATCATATGAATTATCCAAGTGAAATTTCAGACACTTGGTCGGGTGACAATCCTTGTGATTCGTGGAGGGGAATTTTTTGCTCGAACAAAAATGAGGTTACTCGTATAAATCTTCCAAATCGTCAACTGAATGGCACGATCAGTCCTTCACTTGGAACATTAATCTCTCTAACTGAGATTTCACTTGAAGGAAATAACATAAATGGGACTATTCCTGATGACATTGCAGCTTTGCCATTACTAAGTACGTTCAATATATCTGGTAATGACATTGCTCCTCCTCTTCCACCATTCAGAAAAAGTGTAAAACTAATTATCGATGGCAATCCAAAACTAGACAACAAAACTCCACCCAAATCTCCTCCTACCACTCCATCTAATGATGACAATGGCAATGGATCTGACACGGGCAATGAACCAAACAGGTCTAATGGGTCTGATGGGTCTAACAGGTCTAATGGGTCTGATGGGTCTAAACTTCTAGTAATCATCATACCAATCGTTGTTGGTGTGGTGCTTATATGCATAGTTGTTTTATTCGTGTATTGTTGCAAGAAAGTGAAAAATGAAGATATTCCTCCACCAAGCTCAGTTGTTGTACACCCTAGAGATTCATCGGATCCTGAAAACACAGTTAAAATTGTTGTTGCTAATAATAGTGCTACTTCAAGTGATCTTCGAACTCATACAAGTGGTGATACATGTGATACACATGTTATCGAATCAGGGAATTTAGTAATATCAGTTCAAGTACTGCGAAGTGTAACAAAGAACTTCTCTAAAGAGCAAGAACTTGGACGTGGTGGCTTTGGCGTTGTTTACAAGGGAGAGTTGCATGATGGTACGAAAATAGCAGTTAAAAGAATGGAATCCGGGGTGTTGAGTTATAAAGCATTCGATGAATTTGAAGCTGAAATTGCGGTTCTTTCGAAAGTTAGACACCGTAATTTAGTTTCTTTGTTGGGGTTTTCTGCTGAAGGCAATGAGAAACTATTAGTTTACGAGTACATGTCAATGGGGGCTTTAAGTAGACATCTTTTTCATTGGAAGGAGTATGGTTTGGAGCCTTTGACTTGGAAAAGAAGGATTAATATTGCTTTGGATGTTGCTCGAGCGATGGAGTATTTACACAACTTAGCACATCAGTCATTTATTCATAGAGATCTCAAGTCTTCAAATATATTACTCGATGATGATTATCGAGCAAAAGTTTCAGATTTTGGACTAGTAAAACTTGCACCTGATGGTAAATATTCTGTTGCGACTAGACTGGCTGGAACATTTGGGTACCTAGCTCCTGAATATGCTGTGACAGGAAAAGTAACAACAAAGGTTGACGTGTTCAGTTACGGGGTAGTACTAATTGAACTAATAACGGGCATGACAGCACTGGATGAAGATCGACCTGAAGAAACCCGCCATCTAGCCTCATGGTTCTACCATATAAAATCTGACAAAGATAAACTCAGAAACTACATCGATAAATCTCTTAATATATCAGACGAAACATTCGAAGAGATGTACATAGTTGCGCAACTAGCCGGCCATTGCATATCAAGAGAGCCTAACCAAAGACCCGACATGGGTCATGCAGTCAACGTTCTTGCTCCCCTAGTCGAGAAATGGAAGCCCGTCAACAACGATTCAGATGATTCTGTAGGCATCGATCTAGGGCAGCCTCTTTTGGAATTGGTAAAAGGTTGGCAAGATGCAGATGGTAAAAATTCTAGTAGTTTGAATCTCGATGATAGCAAAGGAAGCATTCCTTCACGACCAGCTGGGTTTGCCGATTCATTTACTAGTGCTGATGGTAGATGA

Protein

Gene

>g38172.t1
ATGAAGCAATTCATGGCAAGAGTTAATTTTCTAGTTCTAATAATAAGTCTTGCCTCCATATTTTCAGTTGTTAACAGTGCAACTGATTCTAATGATTTAGTCATCATCCGAGAATTTCTCAAGGGAATACAAAATCCAGAAACACTTAACTGGGAAGGAGATGATCCATGTGGTTCTTGGAAATTTATATTCTGTCATGGTACTCGTATTACTCAAATCCAAACAAAGGATATCAATTTACATGGCAGTCTTCCTCAAAATCTGAACAAACTTTCAGAGCTAACTGATCTTGGTCTTCAAAACAACAATTTGTCTGGAACATTACCGTCACTTTCTGGGTTGTCAAAACTTAAGCGTGCCTTTTTTGGAAACAATAAATTCGACACAATTCCTTCTGATTTTTTCACAGGACTTGAAAGTTTGCAGGTTATTTCTTTGGAGAGAAATCCTTTGAATGCAACTACTGGTTGGGTGTTGCCTTCTGACCTAAAAAGTTCTATCCAGTTAACCAATTTATCTTTATCCCAATGTAATCTTGTAGGCAAAATGCCTGACTTCTTAGGAAGTATGAGTTCATTGATGCTTCTTGATATGTCTTATAATCGTCTGTCTGGTGAAATACCGACTAGTTATTCTGGACTGCCATTGCAAATATTGAAGCTTAACAATCAGGATGGATCTGGACTTAGTGGAGGTATTGATGTTATAGCTTCTATGACACAACTAAGTCTTGTTTGGATTCATGGAAATGCTTTTACCGGTCCTATACCCGAAGCTATAGGAGCATGCACATCTTTAAAGGAATTTGTGATCAATAATAATAAACTTGTTGGACTTGTTCCTACCAATCTGACAACATTGCCTAAGCTTGATATGCTGCAATTGCAAAATAATAACTTAATGGGTCCGATTCCAAAGGTTTCTTTCACAAACTTCACCTTTCTTCCAAATAAGTTCTGTCAATCCTCTCCTGGTATGCCATGCTCACCTCAAGTTACTGCCCTTTTGAATTTTCTTGATCATATGAATTATCCAAGTGAAATTTCAGACACTTGGTCGGGTGACAATCCTTGTGATTCGTGGAGGGGAATTTTTTGCTCGAACAAAAATGAGGTTACTCGTATAAATCTTCCAAATCGTCAACTGAATGGCACGATCAGTCCTTCACTTGGAACATTAATCTCTCTAACTGAGATTTCACTTGAAGGAAATAACATAAATGGGACTATTCCTGATGACATTGCAGCTTTGCCATTACTAAGTACGTTCAATATATCTGGTAATGACATTGCTCCTCCTCTTCCACCATTCAGAAAAAGTGTAAAACTAATTATCGATGGCAATCCAAAACTAGACAACAAAACTCCACCCAAATCTCCTCCTACCACTCCATCTAATGATGACAATGGCAATGGATCTGACACGGGCAATGAACCAAACAGGTCTAATGGGTCTGATGGGTCTAACAGGTCTAATGGGTCTGATGGGTCTAAACTTCTAGTAATCATCATACCAATCGTTGTTGGTGTGGTGCTTATATGCATAGTTGTTTTATTCGTGTATTGTTGCAAGAAAGTGAAAAATGAAGATATTCCTCCACCAAGCTCAGTTGTTGTACACCCTAGAGATTCATCGGATCCTGAAAACACAGTTAAAATTGTTGTTGCTAATAATAGTGCTACTTCAAGTGATCTTCGAACTCATACAAGTGGTGATACATGTGATACACATGTTATCGAATCAGGGAATTTAGTAATATCAGTTCAAGTACTGCGAAGTGTAACAAAGAACTTCTCTAAAGAGCAAGAACTTGGACGTGGTGGCTTTGGCGTTGTTTACAAGGGAGAGTTGCATGATGGTACGAAAATAGCAGTTAAAAGAATGGAATCCGGGGTGTTGAGTTATAAAGCATTCGATGAATTTGAAGCTGAAATTGCGGTTCTTTCGAAAGTTAGACACCGTAATTTAGTTTCTTTGTTGGGGTTTTCTGCTGAAGGCAATGAGAAACTATTAGTTTACGAGTACATGTCAATGGGGGCTTTAAGTAGACATCTTTTTCATTGGAAGGAGTATGGTTTGGAGCCTTTGACTTGGAAAAGAAGGATTAATATTGCTTTGGATGTTGCTCGAGCGATGGAGTATTTACACAACTTAGCACATCAGTCATTTATTCATAGAGATCTCAAGTCTTCAAATATATTACTCGATGATGATTATCGAGCAAAAGTTTCAGATTTTGGACTAGTAAAACTTGCACCTGATGGTAAATATTCTGTTGCGACTAGACTGGCTGGAACATTTGGGTACCTAGCTCCTGAATATGCTGGTATGTTCATCCTAAAGCTCCTTTGATAGAGAGAATATCATTTTAGCAAGTAGCAACCACTGAAAATTTTCGTTATTAGTTTAGGATGCAATGCTGAAAATTGCTAAAGTTCACCTATTTAATCATAAATCCAATGACCCCAATTATAGTACCCTTCCTCTGATTTTCCACCAGAGCGTAGCATAACAGTCCATTTAGTTTTCACAGTTATAACAAATTATATATATCAATTTAAGCATGTGATGGTTTTCTGACTTTTTACAGTAAACAAATTATTGCACCATATGGAGGTTAGGTGAGTTCCCTCGATTTCCTTAATTTAAGCAAGCACATTTTGACATGTATTTTAATCATGTTCACTTTGCTTATCAAGTTGTGGGATTGGGGAAAACAAAAACAAAAAAAAAACAAAAAGAGCATAAACAAAATATAATCTGCCACGCCACAATTCTACCATATCTCTGCACTTCTTACTATTTCAAAAATAAATATTTAGTGACTAATAACGACTTAACATTTTGAATATATTAGAAATTTAGACCACATTTTTTGTGGAGATGATACATGTGGATTCAACATCCATAATGTTTTGTGTCATTATATCTAACTCTAAAGAATATAAACGTGTAGATTGTAGTGCAGTAGGAAAAGTGGGATTTGGTTGAACTGTCTCCACTTGTGTGTGTGTGTCTGTGCATACGCACAGACACAGATGTGTGTATGTGCACATGTTTTCCTTTTATTTATTTTTATTTTTTTATTTTACCATTGTATAATCATTTCATGTCGACGAATTCACAGTGACAGGAAAAGTAACAACAAAGGTTGACGTGTTCAGTTACGGGGTAGTACTAATTGAACTAATAACGGGCATGACAGCACTGGATGAAGATCGACCTGAAGAAACCCGCCATCTAGCCTCATGGTTCTACCATATAAAATCTGACAAAGATAAACTCAGAAACTACATCGATAAATCTCTTAATATATCAGACGAAACATTCGAAGAGATGTACATAGTTGCGCAACTAGCCGGCCATTGCATATCAAGAGAGCCTAACCAAAGACCCGACATGGGTCATGCAGTCAACGTTCTTGCTCCCCTAGTCGAGAAATGGAAGCCCGTCAACAACGATTCAGATGATTCTGTAGGCATCGATCTAGGGCAGCCTCTTTTGGAATTGGTAAAAGGTTGGCAAGATGCAGATGGTAAAAATTCTAGTAGTTTGAATCTCGATGATAGCAAAGGAAGCATTCCTTCACGACCAGCTGGGTTTGCCGATTCATTTACTAGTGCTGATGGTAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020260416.1	5.0e-303	receptor-like kinase TMK3
Swissprot	Q9FYK0.1	9.2e-169	Transmembrane kinase 2
trEMBL	A0A5P1F0T4	3.6e-303	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01820.1	47.03	0.0	823		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g38172	AT2G01820.1	959	458	19	10	944	11	943	47.03	823
g38172	AT1G66150.1	941	456	16	27	944	23	942	46.87	799
g38172	AT1G24650.1	952	450	18	5	944	1	886	44.54	723

Ortholog group

Species	Genes
Allium cepa	g38172.t1
Allium fistulosum	AfisC1G07724; AfisC3G00432; AfisC3G00434; AfisC3G02908; AfisC8G02193
Allium sativum	Asa1G01704.1; Asa2G02328.1; Asa2G05495.1; Asa5G03782.1; Asa7G05432.1; Asa7G06376.1
Arabidopsis thaliana	AT4G29654.1
Oryza sativa	LOC_Os04g58910.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	34	65	12.5	0.12
PF08263.9	LRRNT_2	Family	330	367	27.1	3.4e-06
PF07714.14	Pkinase_Tyr	Domain	600	872	160.8	3.3e-47

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0005576	C	extracellular region
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K00924	E2.7.1.-; kinase	EC:2.7.1.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network