result

Gene information

Detail information of g386929

Location

Gene	Chr	Start	End	Strand
g386929	Scaffold_75141:HRSCAF_458227	202817	203776	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020259596.1	1.8e-50	LOW QUALITY PROTEIN: zinc finger protein ZAT9-like
Swissprot	Q9M202.1	3.5e-35	Zinc finger protein ZAT9
trEMBL	A0A444EP40	5.0e-47	C2H2-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60580.1	33.43	1e-36	150		C2H2-like zinc finger protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g386929	AT3G60580.1	332	148	12	1	310	1	281	33.43	1e-36	150
g386929	AT2G45120.1	341	167	12	1	318	1	312	35.78	8e-36	147
g386929	AT1G02030.1	318	151	10	2	316	3	266	34.59	5e-29	125

Ortholog group

Species	Genes
Allium cepa	g386929.t1; g386930.t1
Allium fistulosum	AfisC8G05169
Allium sativum	Asa0G02918.1; Asa1G00601.1; Asa6G05719.1
Arabidopsis thaliana	AT1G02030.1; AT3G60580.1
Oryza sativa	LOC_Os02g44130.1; LOC_Os04g46680.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13912.3	zf-C2H2_6	Domain	4	26	19.7	0.00056
PF13912.3	zf-C2H2_6	Domain	175	199	39.7	2.9e-10
PF13912.3	zf-C2H2_6	Domain	226	250	35.0	8.6e-09

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network