result

Gene information

Detail information of g388053

Location

Gene	Chr	Start	End	Strand
g388053	CHR1	229179961	229182989	-

Sequences

CDS

Protein

Gene

>g388053.t1
ATGGCTTCTTTTTATCCGAACTCTACAAACCAGAGAGATGACATGACAAACCACCCTTACTTAAGAGACTCAGAACAATCGTTATTATATGCCGAATCATCAAACATGATGTATTTCAATTATCAACCCAATGGTTCATATTCAGAATTATTGGCCAGCGCTAATGATTCTCATACTATTATTTCACAAGATTCTTCAAGTAGCCATCAACATGCCTATAACAATGCATGGAGAGGTTCATTGGATAATGAAAACGATCTTGTCCGTAACTCCGTGCTATTAAATGGTCAGAGTTTGGCTCTTAACCAACCAAAGTTTTCCAATGTGCAAGGTCAAGGATTATCGTTAAGTCTCGGTACTCAAATTCCAGTGTCGTCATTTCGATATCCATCTTCTGATGATAATCCTAGAAACAAACCATCATATGGGCTTAACAGCAGCATATCCAATTCTAAGTACCTGAAAGCTGCCCAAAATCTTCTTAATGAAGTTGTAAACGTGCAAAAAGCTTTGAAGCTGAAACCGAGCATAAGTCAAAGTTTGAACAACTCTAAAGACAATGATGATGCATCAAAGAATGACGGTGAGCAGTCAAACCCTGATCAAGAGTCTACTGCTGTTTCTGCTGCCGAGATTTCACCGTCGGAAAGACAAGAGCTTCAGAACAAGATAACTAAGCTTTTGGCTATGTTAGACGAGGTGCAGTTTTTATAGTCATCTCATAGTTCCTAAACTATCTATTTTTATGGTATTATAGCAAGTCAAGCTAAGCTTAACATCCATTCGTACTAACTGTCACCAAATATTACAAGTTCATATGCTAGGCCCAAGAGTGAAATTTATTTGGAGTTCATCGCTATAAATAAAAGTCACTTCAAACACTACCAGTTGGTCCTTCATAAATCACAGTTGTTATCACAATCAATATGCATTAGAAGTTTTAATTTTATGGGTTATGCTGTCGTGTTTAGTATTTAAAACATCGCATCTTAACTTTCTTTTTAAGTTGATCATATAGTTCTTTCAATTAGTTTATTCTATGTTTGAAAATCTTTCCCGTCTTTCGTTAGGCTTTTACTCTGTGCAAGAATCAGAATAAAGTAGAAACAAAAATAGAGACCACACTTGATAGTTTTTTTGCAGGGTAATTGGATACAGTCTAATCGTCTATAGGATCAGCAGTTGACTACCCTTTAATCTTGAAACTTCCAAATATTTCATAAGTTTATAATTATGTCTTAATGTTGTATTAATTTAAGAGTGCTGCTGTAACTACTTATTTTTGATGATGATACGAAGTTTGACAAAATATATAAGCGTGGCAGGTGGATCGAAGATACAAACAATACTACCATCAAATTCAAATTATTGTATCATCCTTTGATGCAATAGCTGGCTGTGGGGCAGCAAAACCTTACACGGCTCTTGCACTACAAACAATTTCAAGGCATTTTCGATGCTTAAGAGATGCTATAAGCGGTCAAATTCAGTCAACTAGGAAGCTTCTAGGAGAACAAGAAAGCTCAAGCACCAAAGGATGTGGGATTTCTCGACTTCGTTTCATAGACCAGGAGTTGAGGCAACAAAGAGCTATGCAGCAGCTTGGTATGTTGCAACAGCCACATGCTTGGAGACCTCAGCGGGGCTTACCTGAAACTTCTGTTTCTCTTCTTCGAGCCTGGCTATTTGAGCATTTTCTTCATCCGTAATGTCCCTTCTCTTTAAATAACCTCCTTTTCTGTTTGCTTGTTTCTTTGGTTATCTATATAATAATGAGCCAAAAAGTTAAAAATAAAATCCCTAGCAATAATAATGTGTGGATTTTTGTTAATCAAAATTGGGGTTTGTTTCCCACCTATCCAGGACAGGTTCTTCTACTCTGGTAAATAACCAGAGTAAGGAAACAGTTTCCTTTTTATTTATGTTTAATTTTTTTTATGTCTAACAGCGCATATTTTTTTTCAAATTTTATTTTATTAATGCACACCACTGGTTAAAACCATCAGGTGTTTGATCTAATTTTCCTGCAACATAGCTTGTTGTATATTTCTTGTAGTTGTGTATTCTAAGCATTGTTAATTTAATTTATCTGGATTGCCTTGCAGCTACCCGAATGATTCTGAAAAGCTAATGCTAGCAAGACAAACGGGTTTGACAAGGGGTCAGGTTTGTTTTCCATTTTTTGTTCTAATTCTTATGTATCAGCTATCTATTCATTAATAGAAGCATTATAATATTATTTTCTAGGCAGATCCTACGCATCACCACCACCAAATCTGTAACAGTTAATTGATTAGAAGTTTAGGTATTGGGTCATTTTCGCAAGACTTGGAAGTATTATATTCGTCGAGGCGTCTGTTTTATCAATATACATATATGAGGTGTTAATGTAGGTTATGATTTAACAACTTTGCATTATCTCTTTATATTTAATCCTACCTATTAATTAGTCTATGAGAAAGACAGTTTAAATAGTCTTTTTTCTATCATGACATATGCATGATTGAACCTACCCATATTCATCAATTGTTATTTGCTAATTATACCAAGTTTTATGCCCATAGGTGTCTAACTGGTTCATAAATGCCCGGGTGCGCCTCTGGAAACCGATGATAGAAGAAATGTACAAAGAAGAATTTGGAGAAACTGAACTGGAATCAAATACATCATCAGAGAATGCAAACAAAATCAAAGATGATAATCAATCATGTGATCAAGATAGAGATCAACCCATGCTTGTTCAGAGGCCAGGTCATCAGACCCAAACCCAGTTCATTGATTCCTCCAAACCAAACCTAATGATTCCAAATATGGAAATGGGCGCTTCTAGTAATTTCCAACATGAAGCAATAGAAAATGAGGAAGCTTACAGAGCCTTTCAAGACAACGATAGGTTCGTGGCTTATGGTACGCTGGGGCTGACATTAGGGTTACAACGTGGGGAAGAAGCATCGGATATATATAATACACAAGGTGGTTCTTCACTGGGGTTTGGACCATCTCATCTACTGCATGATTTTGTGGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020269008.1	4.4e-171	BEL1-like homeodomain protein 7
Swissprot	Q9SIW1.1	1.1e-97	BEL1-like homeodomain protein 7
trEMBL	A0A5P1EN06	5.1e-161	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G16400.1	52.53	4e-107	385	BLH7	BEL1-like homeodomain 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g388053	AT2G16400.1	415	132	11	143	534	110	482	52.53	4e-107	385
g388053	AT4G34610.2	339	105	7	111	435	93	413	59.59	3e-102	369
g388053	AT4G34610.1	339	105	7	111	435	93	413	59.59	3e-102	369

Ortholog group

Species	Genes
Allium cepa	g346693.t1; g361908.t1; g388053.t1
Allium fistulosum	AfisC1G02541; AfisC5G04747; AfisC8G03523
Allium sativum	Asa5G01568.1; Asa7G02433.1
Arabidopsis thaliana	AT2G16400.1
Oryza sativa	LOC_Os03g06930.1; LOC_Os03g47740.1; LOC_Os03g47740.2; LOC_Os03g47740.3; LOC_Os12g43950.1; LOC_Os12g43950.2; LOC_Os12g43950.3; LOC_Os12g43950.4

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07526.8	POX	Domain	148	284	173.9	2.1e-51
PF05920.8	Homeobox_KN	Family	352	391	60.9	7e-17

Gene Ontology

Accession	Ontology	Name
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network