result

Gene information

Detail information of g390048


Location
GeneChrStartEndStrand
g390048Scaffold_75514:HRSCAF_458600392048393327+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAQP25675.12.9e-169MYB transcription factor
SwissprotP27898.17.2e-56Myb-related protein P
trEMBLA0A1S5VIF02.1e-169MYB transcription factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G47460.154.464e-57 218ATMYB12;MYB12;PFG1myb domain protein 12

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag390048.t1; g525009.t1
Allium fistulosumAfisC2G04518; AfisC6G03568
Allium sativumAsa8G03406.1
Arabidopsis thaliana
Oryza sativaLOC_Os01g19970.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain146151.48.2e-14
PF00249.28Myb_DNA-bindingDomain6711257.78.7e-16

Gene Ontology
AccessionOntologyName
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001134Ftranscription factor activity, transcription factor recruiting
GO:0001135Ftranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0008150Pbiological_process
GO:0008285Pnegative regulation of cell proliferation
GO:0009058Pbiosynthetic process
GO:0009314Presponse to radiation
GO:0009411Presponse to UV
GO:0009416Presponse to light stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009812Pflavonoid metabolic process
GO:0009813Pflavonoid biosynthetic process
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009962Pregulation of flavonoid biosynthetic process
GO:0009963Ppositive regulation of flavonoid biosynthetic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010224Presponse to UV-B
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0044212Ftranscription regulatory region DNA binding
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032502Pdevelopmental process
GO:0040008Pregulation of growth
GO:0042127Pregulation of cell proliferation
GO:0042221Presponse to chemical
GO:0042440Ppigment metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045926Pnegative regulation of growth
GO:0046148Ppigment biosynthetic process
GO:0048518Ppositive regulation of biological process
GO:0048519Pnegative regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048523Pnegative regulation of cellular process
GO:0048638Pregulation of developmental growth
GO:0048640Pnegative regulation of developmental growth
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051552Pflavone metabolic process
GO:0051553Pflavone biosynthetic process
GO:0051554Pflavonol metabolic process
GO:0051555Pflavonol biosynthetic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0071704Porganic substance metabolic process
GO:0080090Pregulation of primary metabolic process
GO:0097159Forganic cyclic compound binding
GO:1900384Pregulation of flavonol biosynthetic process
GO:1900386Ppositive regulation of flavonol biosynthetic process
GO:1901363Fheterocyclic compound binding
GO:1901576Porganic substance biosynthetic process
GO:1901615Porganic hydroxy compound metabolic process
GO:1901617Porganic hydroxy compound biosynthetic process
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09422MYBP; transcription factor MYB, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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