result

Gene information

Detail information of g392474

Location

Gene	Chr	Start	End	Strand
g392474	Scaffold_75852:HRSCAF_458938	74782	77424	-

Sequences

CDS

>g392474.t1
ATGATATTTTGTCATTGTGCTATTTTGTCAGCAGGACACATCAGCAGACTATACAAGCTGATTATTGGAAGGCCGAATAGACATGACCCAGTCTTACATTCACCTCTAAACCTTCATCCTTCTCAATTTATATTCATGGCGTTTTCAAGTACAAGTCGACAGAAGAGTTTTCTCCTCTTTCTCTATTTCAACATCTCCTACGCGGTAAACGATGGAATTACTCTTACTGAATCCATTACTGGCTCTGAAAAGCTCGCATCCAAAGGAGGCAAATTTGAACTAGGATTTTTTCAACCAGGCAAATCTCGCTACTACTATCTTGGAATATGGTACAATCTTAACCTCGTACTTGAACAAACTTCAGTTTGGGTTGCCAACAGAGAAACTCCCTTAACTGATATTTCCAAAACAAAACTTGCAATCTCTGAAAATGGCAATTTAGTGCTTTCCAACCAAACAAACCCTCTTATTTGGTCAACTAATATCACTCATAATACTCATAAAGTAGTAGCTGTTCTTCTTGATAGTGGTAACTTAGTTTTAAGAGATGTATCAAATCCAAACGTAACTCTGTGGCAAAGCTTCGACCATCCAACTCACACTTATTTACCAGGCAGCAAGCTCGGACTAAACAAAGTAACCAAAGAGTTGCATAGATTAACATCCTGGAAAAATGAAGACGATCCTGCTCCTGGAATCTTCCACCTTGAAATCGATCCAAACAGCACAAGTCAGTACTTCGTACTCTGGAACAAGACCTTCAACTACTGGAGCTCCGGCACCTGGGATGGTTATACTTTCAGTTCGGTTCCTGAAGTGACCCAAAATGGCATTTACCTCGCCCATTACATTTCCAATGACAAAGAGAGTTACTTCACATACACCGTGAACAGCGACCACCCAATCACTTCTAGGATGATTATGGACTTATCCGGTCAGATCAAGCACTTGACTTGGGTGGCAAATAGCGGCTGGCGTCAGTTCTGGTCTCAACCCCAACAACAGTGTGATGTTCATGCTTTATGTGGTTCATTTGGTGTCTGCAACGAGCTTGCTATGCCATTTTGTAGATGTATTAAGGGTTTTACTGAAAACACTCTATCGGACTGGGCTTTGAGCAACTGGGCTGGAGGCTGCGTCAGAAATACAAAATTGGAGTGTGAAAAGGATCGATTCGTTACTATGCCCAACACTAGAATGCCTGATAATCCTAAAAGTGTACAAGGTAGAAGTGCTTCTGATTGCGAGTCCTACTGTTTGAAAGATTGTTCTTGTACTGCATACAGTTATAACTCTAGAGGTTGCTTTGTTTGGCATGGCGATCTTCTTCATCTTCAAGATCAGTACAATGGCCAGAATGGGGGGACTTTGTTTGTTCGTCTTGCCACTTCTGAACTTCCTATTGTGAATAAAAACAAATTGGCTATGATAGCTAATTATGTAGTAAGTGCTATCACAGGCATTCTAGTGTTATGTATGGTTGCATGGTTGGTATGTTGTTATAGAAGGGAAAAGGCATATAAACAGAAGGCCGTGGAAGGAGTTTTGAGTGCATTTCGATACAGGGAACTGCAACGAGCAACCAAAAACTTCTCAGAAAAATTAGGAGGAGGAAGTTTCGGGTCAGTTTTCAAAGGAGTTCTACCCAACTCAACATCAAGTGATATGATTGCCGTGAAACGGTTGGAAGGAGTTAGACAAGGTGAAAAGCAGTTCAGAACGGAGGTGAGCACAATAGGAAGAATACAACATGTGAATCTTGTTCGACTTCATGGATTTTGTTCTGAAGGACTGCACAGATTGTTAGTGTATGAGTACGTGCCCAATGGTTCTTTGGACAACAAACTGTTTAATGAAGATAGTAGTTTAGATTGGAAAACAAGGTACCAGATAATGCTAGGAACAGCACGAGGACTGATTTATCTGCATGAGGAGTGTAGAGATTGCATTGTGCATTGTGATATAAAGCCCGAGAACATACTTCTGGATGCTTCCTTTGTGCCTAAAGTGGCTGATTTTGGAATGGCAAAATTAATAGGAAGAGATTTTAGTAGGGTATTGACTACGATGAGAGGGACAATAGGTTACCTTGCTCCGGAATGGATATCGGGAGTGGCAATAACAACAAAGGCTGATGTGTACAACTATGAAATGATGCTTTTTGAGATCATTTCAAGTAAGAGGAATTTAGAAAAACTACAAGGGCAGAAAATCAGTTATTTTCCTTCACTGGCGGTGAATAAGATGAAGCAAGGGGATGTGATGAGTTTAGTAGATGAGAAACTAAAAGGAGGAGACATTTTAGAAGAGGAAGTTATTAGAATTTGTAAAATTGCATGTTGGTGCATTCAGAAAGAGGAAGACCATAGACCCTCGATGAGTCAAGTGGTTCAAATGTTGGAAGGTGTTATGGAAGTTAGCATGCCACCCATTCCAAGAATGTTGCAGATACTTGCGGAAAATATTGAAGACACTGATTTATTTTATGAGCTTTTTTGGAATGATGCTAGTAGTAATTACGTCGTCGGGAGGATCAAAAGCTTTTCTACTAGTCCATGTATTGATATCTAA

Protein

Gene

>g392474.t1
ATGATATTTTGTCATTGTGCTATTTTGTCAGCAGGACACATCAGCAGACGTATTTAGCCAGCAATGGTTGGCGCAAGATTCTAACTCAAAAATTACCTATTTTTTTGCCAGCTTATATAAGTATACAAGCTGATTATTGGAAGGCCGAATAGACATGACCCAGTCTTACATTCACCTCTAAACCTTCATCCTTCTCAATTTATATTCATGGCGTTTTCAAGTACAAGTCGACAGAAGAGTTTTCTCCTCTTTCTCTATTTCAACATCTCCTACGCGGTAAACGATGGAATTACTCTTACTGAATCCATTACTGGCTCTGAAAAGCTCGCATCCAAAGGAGGCAAATTTGAACTAGGATTTTTTCAACCAGGCAAATCTCGCTACTACTATCTTGGAATATGGTACAATCTTAACCTCGTACTTGAACAAACTTCAGTTTGGGTTGCCAACAGAGAAACTCCCTTAACTGATATTTCCAAAACAAAACTTGCAATCTCTGAAAATGGCAATTTAGTGCTTTCCAACCAAACAAACCCTCTTATTTGGTCAACTAATATCACTCATAATACTCATAAAGTAGTAGCTGTTCTTCTTGATAGTGGTAACTTAGTTTTAAGAGATGTATCAAATCCAAACGTAACTCTGTGGCAAAGCTTCGACCATCCAACTCACACTTATTTACCAGGCAGCAAGCTCGGACTAAACAAAGTAACCAAAGAGTTGCATAGATTAACATCCTGGAAAAATGAAGACGATCCTGCTCCTGGAATCTTCCACCTTGAAATCGATCCAAACAGCACAAGTCAGTACTTCGTACTCTGGAACAAGACCTTCAACTACTGGAGCTCCGGCACCTGGGATGGTTATACTTTCAGTTCGGTTCCTGAAGTGACCCAAAATGGCATTTACCTCGCCCATTACATTTCCAATGACAAAGAGAGTTACTTCACATACACCGTGAACAGCGACCACCCAATCACTTCTAGGATGATTATGGACTTATCCGGTCAGATCAAGCACTTGACTTGGGTGGCAAATAGCGGCTGGCGTCAGTTCTGGTCTCAACCCCAACAACAGTGTGATGTTCATGCTTTATGTGGTTCATTTGGTGTCTGCAACGAGCTTGCTATGCCATTTTGTAGATGTATTAAGGGTTTTACTGAAAACACTCTATCGGACTGGGCTTTGAGCAACTGGGCTGGAGGCTGCGTCAGAAATACAAAATTGGAGTGTGAAAAGGATCGATTCGTTACTATGCCCAACACTAGAATGCCTGATAATCCTAAAAGTGTACAAGGTAGAAGTGCTTCTGATTGCGAGTCCTACTGTTTGAAAGATTGTTCTTGTACTGCATACAGTTATAACTCTAGAGGTTGCTTTGTTTGGCATGGCGATCTTCTTCATCTTCAAGATCAGTACAATGGCCAGAATGGGGGGACTTTGTTTGTTCGTCTTGCCACTTCTGAACTTCCTATTGTGAATAAAAACAAATTGGCTATGATAGCTAATTATGTAGTAAGTGCTATCACAGGCATTCTAGTGTTATGTATGGTTGCATGGTTGGTATGTTGTTATAGAAGGGAAAAGGCATATAAACAGAAGGCCGTGGAAGGAGTTTTGAGTGCATTTCGATACAGGGAACTGCAACGAGCAACCAAAAACTTCTCAGAAAAATTAGGAGGAGGAAGTTTCGGGTCAGTTTTCAAAGGAGTTCTACCCAACTCAACATCAAGTGATATGATTGCCGTGAAACGGTTGGAAGGAGTTAGACAAGGTGAAAAGCAGTTCAGAACGGAGGTGAGCACAATAGGAAGAATACAACATGTGAATCTTGTTCGACTTCATGGATTTTGTTCTGAAGGACTGCACAGATTGTTAGTGTATGAGTACGTGCCCAATGGTTCTTTGGACAACAAACTGTTTAATGAAGATAGTAGTTTAGATTGGAAAACAAGGTACCAGATAATGCTAGGAACAGCACGAGGACTGATTTATCTGCATGAGGAGTGTAGAGATTGCATTGTGCATTGTGATATAAAGCCCGAGAACATACTTCTGGATGCTTCCTTTGTGCCTAAAGTGGCTGATTTTGGAATGGCAAAATTAATAGGAAGAGATTTTAGTAGGGTATTGACTACGATGAGAGGGACAATAGGTTACCTTGCTCCGGAATGGATATCGGGAGTGGCAATAACAACAAAGGCTGATGTGTACAACTATGAAATGATGCTTTTTGAGATCATTTCAAGTAAGAGGAATTTAGAAAAACTACAAGGGCAGAAAATCAGTTATTTTCCTTCACTGGCGGTGAATAAGATGAAGCAAGGGGATGTGATGAGTTTAGTAGATGAGAAACTAAAAGGAGGAGACATTTTAGAAGAGGAAGTTATTAGAATTTGTAAAATTGCATGTTGGTGCATTCAGAAAGAGGAAGACCATAGACCCTCGATGAGTCAAGTGGTTCAAATGTTGGAAGGTGTTATGGAAGTTAGCATGCCACCCATTCCAAGAATGTTGCAGATACTTGCGGAAAATATTGAAGACACTGATTTATTTTATGAGCTTTTTTGGAATGATGCTAGTAGTAATTACGTCGTCGGGAGGATCAAAAGCTTTTCTACTAGTCCATGTATTGATATCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258340.1	1.0e-302	uncharacterized protein LOC109834727
Swissprot	O64477.1	5.7e-218	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130
trEMBL	A0A6P5FFS0	1.2e-265	uncharacterized protein LOC109714840

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G19130.1	52.38	0.0	788		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g392474	AT2G19130.1	800	344	18	56	830	9	796	52.38	0.0	788
g392474	AT4G00340.1	768	410	20	79	818	27	777	40.76	2e-143	506
g392474	AT4G27290.1	748	422	17	71	797	25	734	35.70	2e-130	463

Ortholog group

Species	Genes
Allium cepa	g114879.t1; g223625.t1; g231660.t1; g28667.t1; g34639.t1; g376837.t1; g392474.t1; g392992.t1; g393005.t1; g450089.t1; g90119.t1
Allium fistulosum	AfisC2G09348; AfisC3G04139; AfisC3G04861; AfisC3G04880; AfisC3G04884; AfisC3G04886; AfisC3G04888; AfisC3G04889; AfisC3G04892; AfisC3G04893; AfisC3G04925; AfisC3G04926; AfisC3G05189; AfisC3G05552; AfisC3G05554; AfisC3G08934
Allium sativum	Asa0G03374.1; Asa0G05382.1; Asa2G03945.1; Asa2G03965.1; Asa2G03967.1; Asa2G04010.1; Asa2G04092.1; Asa2G04103.1; Asa2G07458.1; Asa6G00461.1; Asa7G06596.1
Arabidopsis thaliana	AT2G19130.1
Oryza sativa	LOC_Os01g06240.1; LOC_Os01g12290.1; LOC_Os01g40499.1; LOC_Os01g40499.2; LOC_Os01g45520.1; LOC_Os01g65010.1; LOC_Os01g65030.1; LOC_Os01g65060.1; LOC_Os01g66610.1; LOC_Os01g66640.1; LOC_Os01g66680.1; LOC_Os04g34250.1; LOC_Os04g34270.1; LOC_Os04g34290.1; LOC_Os04g34320.1; LOC_Os04g34330.1; LOC_Os04g34370.1; LOC_Os04g34390.1; LOC_Os04g34410.1; LOC_Os04g34420.1; LOC_Os04g42740.1; LOC_Os05g07300.1; LOC_Os05g07300.2; LOC_Os07g36780.1; LOC_Os10g20120.1; LOC_Os10g20160.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	119	225	118.5	1.1e-34
PF00954.17	S_locus_glycop	Domain	257	364	100.6	6.3e-29
PF08276.8	PAN_2	Domain	387	443	62.7	2.3e-17
PF00069.22	Pkinase	Domain	532	798	160.1	6e-47

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network