result

Gene information

Detail information of g393076

Location

Gene	Chr	Start	End	Strand
g393076	Scaffold_75930:HRSCAF_459016	934600	939232	-

Sequences

CDS

Protein

Gene

>g393076.t1
ATGTCCTATGTACCTACTTTATATTGCAGGGTTCCTACAATTGGAGGGAAGCCTCTTGATCTGCACCGCCTTTTTGTTGAAGTGACTCAACGTGGTGGTTTTGAAAAGGTTGGTCATCTCACTTTGATATTCGCAAATGAATAGCTTGTAATAAATGATTATTCGCCAACACAGGCTAGCAAATAAGATTTCTACCAGGAATGCCTTTTTTAGGATAAACACAATTTTTTTGATATTTCCACCGTAATATGGCTTGAGAAAGTAACATATTGTCAACCTGGGTTCTGTTACTTGATGAAAACCGGTTTAAACTTATATCCGTTATCCATGACTATAATTTCAAGCCTTCCTATGTAAAAAGCTTATTCATGTATGTTTAATTCTTATATTTCCAAATGTAGTATATCATCGTCCTCTTTTATAGGTTACATCAGAACGTAGATGGAGGGAGCTGAGCAGTGTGTTCGCTTTTCCATCTACAGCAACAAATGCATCATATTTATTGCGAAAAAACTATGGACCGATACTCCGAAAGTATGAGCTGGTCTACTTTTTCAAGGAATGTTCCAACCTTTCACCAAAAGGTAGATCGGTGATTCTTTGCCCTTGTCTTTATTGATGTACCTAAGTAATTTGCTTCATCTTCACTCTTTGATTTGTATGGGCATTATATATTGGCGCACACATTAATGTCATTGTAACAGTGACAATATAGCGTCATGTTTGTACTTATTTGGTAAGAGCTAATTAATCACTTTTGCTTCCAGATGAAAGCAATAACAATTCTGAGTTTTCTGATGCTAACATTGCAAACATGTATCAAGTCTACTCAGCTCATCAAATACCAAGTAAGATTTGATAACTTTCTATTGTCCTAAGTTAAGCTGTGACCGTTATTTTTTTACCATTACCGTATGTCAACAAATTCTGTTTAATTTCATTGGGTAAATGTGAACGATCCCGCCATTCTAAAATGTTCAGTACATTTAGTGAATTTCTACTATAGGCTTTGATTATAAAATTAAAATAAATCAATAATGTGTGTAATATACCTCGCATTCCACATGTTTTTGCTAGTAAAACAACTTACATTGTTGGATAATTTGTAATATGTGAACCAGGGTTATTATTTGTAGGCATACACATCATCTATGATAATGTCATTATAACAGTGACAATATAGCATTATGGTTGAACTTATTTAGTAACAGCTGATTAAACACTTTTACTTCCAGATGAAAGCAATAACAGGTTTGAGTTACCCGATGCTAACATTGCAAGAATGCATCAAGTCAAGTCAACTAATCAAATACCAAGTAAAATTTCATAATTTTCTATTGTCCTAAGTTAGGCTGTAACTGTTATTTTTCCCCACTATCCTATGTCAACAAAATCTGCTTAGTTTGATTGAGTAAATGTGAATGATCACGCATTTCCAAAATGTTCGGTACATTCAGTGAATTTCTACTCTAGGCTTTAGTTATAAAAATACTTCGATAGTGGGTGTTAATATGCCTCAGGTTCCAGATTTTTTGCCAGTAAAACAAGCTTACATTGTTGGATAATTTCTTAAGGAATTCAAGTAATTTGTATATGTTGGTTTGAAGTAATACAATGCCCAAAGTGCCCATCTTTAACATTTAATATATATTATTCATTGAACTTATTTAGCAAGAGCTAATTAGTCACTTTTACTTCCAGATGAAAGCAATAACAAGTTTGAGTTATCCGACACTAACGTTGCAAACATGTATCAAGTCAAGTCAAGTCATCAAAGATCAAGTAAGATTTCATAATTTTATATCGTCCTAAGTTAAGCTGTAACTGTTTTTCTTTTCTTTTCTTTTTTTCTTTTTAACCATTATCCTATATCAACAAAGTCTGTTTGATTTCATTGGGTAAAAGTGAATGATCCCCCCTTTCCAAAATGTTCAGTACATTTAGTGAATTTCAACACTGGGCTTTAATTATAAAATTAAAGCAAATCGATAATGGGTGTTAATATACCTTGGGTTCCGCCTTTTTTTTTTTTGCCAGTAAAACAAACTTGATGCTTCGGTTCGACGGTCTCGGTTCTCAGCTGGTCTCGGTTCTATTCTAATTAGTCACCTTTACCATGTTCGACGGGTCTCGGTTCTAATTAGTCACTTTTACAATCGATAATGGGTGTTAATATAGCATCATGTTCGACGGGTCTCGGTTCTAGTTGGGTCGGATTTTGTTGGATCCAAACTATACATTTTAAAACTTTGATCCGACCCGAGCTTCGGTTCAGGTCGGGTTGGTTCGGGTCCGGTTGGGTAATGGCAGCAAAAGTGTATATATTTTAATGTTTTTTGGTCGGGACTTTCGGATATGATCAGGTCTTTATTGTATTTTTCCATAACCTGGACCCGACTCGAGACCCATCGGGTTCGGGCTTTTTCGGGTCGGTTTGGGTTTGCGGTTTTCGGCTCTAATTGCCAGCCCTATAATAATCTTTTCAAGTATAAACAAAAGGAGACTTGAGTGATAATGATATGTTGGTGTAAGCTTATAGCATCTTTGAAAATTGCTTCACGTATCTTGCAAATTATTATATAATAAGTAGTGGGAGCTTAATTATCAATTTAACTTCTGCAGATGAAGGAAATGACAGTTTTGTGTTATCCGATGCCAACATAGCAAATGTTTATCGAGTCAATTCAACTCAGCAAATACCAAGTAAGATTTTTGTTTCCTTTTTTTTTCCTTCGTAATTTCTTGTCCTTTGCTTTTTCACATCATGAAAATTTGTAGTTTGTATCATTTTTTTTTCCCAAGAAAGCACATGATAGTTTCCAGAAATTAGATGATGATTCCTCCCTAATTCAGAAGGACCAAACCAATTCTTCCTTTGCTTACATTCGTTAGAAGTATTACTACTGCAAACTACGTCCGTATTGTACCGAACAAATTTCCATTTTAGACTAATTTTCAATATTTATTGCACTTTTTGGTTGCTTTTAGAACTGCTTGCAGGTATTATAGGTTGATTTCTGCCTCCCGTCAGCGTTGATGTATGGTATTTCTTGAAGAAGAAAAAAAACCACAATTGTGTCCACATTATTGTCAAAAATCTTAAAATCTCACGATTTAAATCGCGATTCAGATGGAATACCTCCATTTACGATTCGATATACATTCCGATTCAAAACATAGTTAAAACCACAATCAAAAACACGTCCAACTCATACTAACATCTTTAATATACTTATTTATCACAATTCTCATTATAATGTTTTTTAAAAATGGAATTATAGAGAAAATTAGGCATGTTTTGTTTGTTATTTTTAGTTTTTAGCTTTCATCCATGCAAAATTGCACACGGCACATGTATATTGTCGAAAAACGACCAATTTAGAAAGCGAGCTTAACATGGAAAATAAAAAACAATTTTTTTTTGTGTTTTGAGAAATAGCACAAGCACGTGAAACAATCCATTCTTTCATCGTTCCTCTACCCCTCCGTCCTCCCATTTGTCTTTCATTCATCCCCTCCGTCGTTCTTCCATTCTTCTCATATTTGACATACATATTGAAAACCGAGAACATAAAATTCGTTTTTAAACCAAACATTACCTTAAGTTTTAAGTTTAATTGTAGAAGTTCAAACATCAAAATTATCTTTAAAGTGCATACAAACCTTAAAATGCGACCACCACCACTGTTCCAGTGGTTAAGCGCTCCGACTTTAATAGCGTGATCTGAACCGTTGGACAAATATTGGTATGTTGTATACTACATGAAATCTTGTAGCACTAATACCTACTACCATCTAAGTACCCAATTTCAAAAAAAAATAAAAACTGAAATTGTAGAAATTTTGAATCTATTAAATTCTGTTTCGATTTAAAATTTAAATTAGTTATTTAAGATTTAAATTCCATTTTGAAAACCTTGCCCATGAATTTTTACACTGGCGCAACTAATATGGTTCGGATGCAAGTGTAAAATAATAAAGATACAATTCACAATTGCATCCATAAGTTGACTTTAAAAGATTGTCACTTGAGTGTTGATGTGATATAATAAACTTGCAAATTGTTTTAAAACCAATTTATAACTGCAGTAAGTTTTAAAAATTAGCTTAAAATGAAAATTTGTCCTATTGTAAATAGAAAAAATAATAATGAAAGAAGATAAGGTAATGCTAAGTTTCACCGAATCTTTCGTTCCTTCGGTTATATAATAGAAGTGCAATACATGGTTAAAGTACTAAGCAATGACAAGTGTGTACACTGACCATTCTTTTCTTCTTCTTGGTTTTTAAACAAGGTGGGCAACAAACCTCAGTATCAACACCTCGAAAGAGAAAAAGGAAGGAGAGTGATTCTCATGTTAATGTTGCTACTGGTTTCAATGTGTTCTTTGTCGAACATTACTCAGATATGAGGCCTTTATATTCTGGAAAAGAAAAGGCTATGATCAAGCAGATAAACCTTTTATGGAGTAATCTTTCAGAATCAGAAAAGGAGGTAAACCTCATATCAATATAACGACTTGAAAGTCTAGTACTGAGTATGTTCAAAATCGTATACAGTATCTGATTTCTGTTCAATTTGTATTTGCAGGTTTATCAGGCAAGAGAAAAAGCTCGATGCAGAAATATTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267700.1	8.4e-32	high mobility group B protein 15-like
Swissprot	Q9LTT3.1	8.2e-24	Nucleosome/chromatin assembly factor group D 10
trEMBL	A0A5P1EQT2	6.1e-32	ARID domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13350.1	35.55	2e-32	135		HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g393076	AT3G13350.1	256	116	8	9	242	61	289	35.55	2e-32	135
g393076	AT1G04880.1	78	33	0	11	88	52	129	57.69	4e-23	105
g393076	AT1G04880.1	56	32	1	196	248	268	323	37.50	1e-06	50.4

Ortholog group

Species	Genes
Allium cepa	g393076.t1
Allium fistulosum	AfisC6G05614
Allium sativum	Asa7G06430.1; Asa7G06431.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01388.18	ARID	Domain	10	75	55.6	5.7e-15

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000741	P	karyogamy
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006996	P	organelle organization
GO:0006997	P	nucleus organization
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009553	P	embryo sac development
GO:0009559	P	embryo sac central cell differentiation
GO:0009561	P	megagametogenesis
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010197	P	polar nucleus fusion
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0016043	P	cellular component organization
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0030154	P	cell differentiation
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048284	P	organelle fusion
GO:0048856	P	anatomical structure development
GO:0048869	P	cellular developmental process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071840	P	cellular component organization or biogenesis
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network