result

Gene information

Detail information of g393590

Location

Gene	Chr	Start	End	Strand
g393590	Scaffold_75995:HRSCAF_459081	1054804	1058706	-

Sequences

CDS

Protein

Gene

>g393590.t1
ATGGCTTCAAAGGCTATTCTCAAATCAAGTACCCAGAAACCAGTCAAAACAACCGAGATAGAGAAAACATCATCTATCAACGAGAACAAATCAAGAGCTTTGACTCATAACACACCGAAGAATTCTACATCTGAGGCATCAGAAGACCGCCATTCAATTTTTAGTGGAAAAGAATCCGATCTCATGTTTTCAGACAACAATTCTTCAGCAACTACTAATTGTTCCGAGCTGAGTTCTTCTGAAAGTTCAAAACAAATTCCACTTCAAGTCGAAAAAAACACAGAACAAGAGAAAAAGATGTCTGAAACAAGTGTTATAAATGACTGCTCAGCACCTGCAAAAACTAGTGAGACTAGCGTAAGCGCTAAACTTTGTGACCGTGCTGAGTTTGTTGATAGTGGAAAAAGTAGCATGTGTCGCCCAAGCAGCAGTAGTGATATTAGTGACGAGAGCTCATGCAGTAGTTTGAGCAGTAGTGTTAGCAAACCTCACAAATCTAATGATTCTAGATGGGAAGCGATTCAAATGATACGTGCTCGAGATGGAATTTTAGGTTTGAATCATTTTAGGCTTTTGAAAAGGTTAGGTTGCGGTGACATCGGTAGTGTGTATTTATCGGAATTGAGTGGTACTAAGAGTTATTTTGCTATGAAAGTAATGGATAAGGGATCTTTAGCAAGTCGGAAGAAGTTGCTTAGAGCTCAAACAGAGAGAGAAATATTGCAATGCCTCGATCATCCATTTTTACCTACATTGTACACACATTTTGAAACGGATAAATTCTCATGTCTTGTAATGGAGTTTTGTCCTGGGGGAGATTTACACACTCTTCGGCAAAGGCAATCCGGGAAGCATTTTTCAGAACAAGCTGTAAAGTATGCATTTTTTTTTATTCTAATCTATTTCATTTTTTTCATATACCCAGAAAAATTGGACATTTTCTGGAGTCTGTCATAAGACCTCCATTTTTGAGCTATTAACAAAAAGATTCATTCTCATAGCTGGGGTTCAACTATAGTGTGTCTCTTGGCATCTCAATAATTTGGCCAGATGAGCTCTCTTTGATGGCTGCTTCAATTTTAATTTTGAAATATTTATAGACATATTCATACATCTTAATGCTGATCAAAGAGGAACAGCAAAGTGGAAGGTTTTTCAACGTGGATCAAGAAATCTAAGCTTTAAATTCTCCTGTCAGCAGTTGCAAATCTCGTGGAAAATATTTTAATGTTACACCTAAACGTTAGTTCATCTGACTAGAACATTGAGATGAAAGATGAAAGATGAAAGAATAGATTGTTAACATTGTGAATCTTATTGAAAAAATCTCCACATGAGTAAATTTAAAATACATTTGATTTAAACACAAATAATTATGTATTGCTTATGTGTAAATTTGTTTTATTTTCAGGTTCTATGTAGCTGAAGTTCTTCTCGCAATGGAATACCTGCACATGCTTGGAATTGTGTATCGTGACCTCAAACCCGAAAATGTGCTTGTTCGTGCTGATGGACACATAATGCTTTCTGATTTTGACCTTTCTCTCCGTTGCTCTGTGAGCCCTACACTTATCAAATCCACGAACCCTAATTCCGATTCTTTTCGTTACACCAATAGTAATCCTGCACCAGTTTATTGTGTCCAACCTGCGTGCATTGAACCTACATCTTGTATCCAGCCTTCCTGTGCTGTCCCCACCTCTTGCTTCTCCCCTCGTGGGTTCTTCTCTTCTAAATCCAAGAAAAATCGCACAAATTCAAAATTGAAACCTGAGATTGGTAACCAGGTAAACATTTGAATACTTCATTAACTATTTTAGTCTTTTTTGAATAAGTGTTCATTAACATTCTACAGATACACAAATATAGTCACTCATTGAGTAAAAGCTTTATTGTCCAGTTACATATTTGACAGAGACACGTTGTTTGCTTCAATGGAAAAGTCAACAATAAATTACCGTATCAGTAGCATATAAATAATTTTATTTGATAGAAAATCAAACCTACACTCCTCCACTATTTTTGAGAGTGTTGCAATATTTTCTGTTTCATTGGTGTAGAGAATATATGCATGAATAATGTCAAAAATAAAAACACTGAATGTCTTTTCAGTCTTCCCTTCTGTCTTCCAATGAAAGGGAGAGTGTATCTGTCGTTTGAATTTTTAGCCATGCTATTTGGTTAAACGGATCTACCAAGCATTGTGCTATTTCTGTAATTCGATTCATTCCAAAAGTTTCATAGTTAATGTAAAAAAAGATAGTTATGGAGAACATATCTTGTGCCCATTTTCTGGGTCTTGATGAATTGAAGTATAAACCAATTGTTCTTGCTCTCGTCATAAGTCAAAAGGATCTTTACTAAATGTTTGTAGTAATAGTTACAACGAAATGCAACTTAGTCGAATATATGTTTATTTCATCAGAAAACTTAAGTGCCGTATCAGTAGCATATGATCAACTTTATTTGAAAGTGCATTCATAGTCAATCAAATCACACCACAGCTATAGATTGTTCTAGGAAGAAATGTGCTTACTTTGTGACTCCGTTAGTTCCAAATGTGAAGAGTTGAACTTATGACCAATTCATGGTCTTAATAATGACTTAGAGTCTACCAATAAATAAAAAATCTATTTATCCTATCGATGTATGTGTATCTAGGGCTGTTAAGGGGCTGTTAAGGTTGAACCATCAACCGTACCAATCGTTCATGCGGTTACCATTTATAACGGCAACGGTTGAAGAATTCGATAACCGCGGTTAAACATACCAACCATACATAACTGTTTTGTATAATATTTAACATTAAAGTATAAAAATTAGTAATTTAAGTTAAAACAACAGCGTGTACATTAATAATATGTGCCTTCATGAAATAATAACATGTGCATGCATATTGGTCATTTTATAAACAAATAAATAAATTTGCAAAAACCAATTGGAGTTATATGAATTTATCATCAATAATGCATATGATTGAAAATATATGTACAAAATGCTTTAAAATTGAAAATATGATAGTTAACCGTCATATATTGTTGCGGTAACGGTTATAAGAATTTGTAACCGTTGACAACGGTTACGGTTGGTGGTAATAAAGACAGTTACCAAAACCATAACACCCCTATGTGTATCACAATATATATGTGGAATAAAATGGCATGCGGATTTCATTTGCAGTTATTTGAAATATGTACAGTGGTATACATGTGATGATAGTAAGATAAGCTTTGATACAAATAATAATAATAATATTAAAAAAATAAAAATAAAAATAAAAAACCCATAAAAATATTTGATACTCCATTTCATTGGTTACTACGCAGAACAATTTAGTCAAGCCACAAATGTTAAATTGTGCAGGTAACACCATTACCAGAGCTCATAGCAGAGCCCACAGATGCACGATCCATGTCATTTGTAGGCACCCATGAATACCTAGCACCAGAAATCATCAAAGGAGAAGGTCATGGAAGTGCAGTAGATTGGTGGACATACGGCATCTTTCTATATGAGCTACTATTCGGAAAAACACCGTTCAAGGGCTCAGGCAATAGAGCCACATTATTCAACGTTGTAGGTCAGCCCTTAAGGTTCCCTGAGTCACCCGGAGTCAGTTTCTCAGCCAGAGACCTCATAAGAGGTTTGCTAGTGAAAGAGCCACAGCACAGGCTGGGCTCAAAACGAGGTGCTACCGAAATCAAACAGCATCCGTTTTTCGAAGGGGTGAATTGGGCCTTGATAAGATGTGCAAGTCCACCTGAGATTCCAAAACCCGTTGACTTTGAAAGGATATCTCCTGTGCCTGCTGCAGTTCCTGCATCGAGCGGCGAGAAGGTTGCAGTGGTTGATCCAGGTGCTCAGAAAGGTGGTGATAAGTTTTTGGAGTTCGATTTCTTCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010942863.1	4.4e-212	serine/threonine-protein kinase D6PK
Swissprot	Q0DCT8.1	1.0e-197	Protein kinase G11A
trEMBL	A0A6I9SFG8	3.2e-212	serine/threonine-protein kinase D6PK

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47750.1	76.31	0.0	771	D6PKL2;PK5	D6 protein kinase like 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	bit score
g393590	AT5G47750.1	515	103	6	89	596	84	586	76.31	771
g393590	AT4G26610.1	486	109	6	111	596	48	506	72.02	709
g393590	AT5G55910.1	467	96	7	132	596	52	498	74.73	697

Ortholog group

Species	Genes
Allium cepa	g188642.t1; g393590.t1
Allium fistulosum	AfisC3G03054; AfisC6G04073
Allium sativum	Asa2G02369.1; Asa8G03012.1
Arabidopsis thaliana	AT2G44830.1; AT4G26610.1; AT5G55910.1
Oryza sativa	LOC_Os02g49310.1; LOC_Os04g46180.1; LOC_Os04g46180.2; LOC_Os06g18830.1; LOC_Os08g38320.1; LOC_Os08g38320.2; LOC_Os08g38320.3; LOC_Os09g08420.1; LOC_Os09g30150.1; LOC_Os09g30150.2; LOC_Os09g30150.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	190	343	125.8	1.7e-36
PF00069.22	Pkinase	Domain	433	536	74.9	5.9e-21

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08286	E2.7.11.-; protein-serine/threonine kinase	EC:2.7.11.-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network