result

Gene information

Detail information of g393847

Location

Gene	Chr	Start	End	Strand
g393847	Scaffold_76025:HRSCAF_459111	366826	367872	-

Sequences

CDS

Protein

Gene

>g393847.t1
ATGAACTACGCAAACAGTCAATGGGAAGCTGCTTCAGACAGTTTAGATATCTATTTAACCGGAGATAATGATTGGGATCAGTACATTCAAGAACTTCCTTCTTCAGATAATTCCTGTTTAGAATCACCCGAGAGTCCACCCGATAATATAAACAATATTGTAAAAGGAAAATTTGTAGAATTCCCTGGAAGAAGTAACGGAAACATTCCAAAAATTCTTTCATTTGGTGATCCAAGCTCTCAAGTGGACCTACACGCAACGCCTGCAGTTAAGAAAATAACGAACAGGTCGAGAACAACGAGGAGTAGGCCTGATTCGGCTAATCGTGAACATGTAATTGCAGAGAGGAAAAGGAGGGAGAAAATAACAGAAAATTTGATCGCATTGTCAGCTATTGTCCCAGGTTTGAAGAAGGTATGTATAGTATCTTTATTCATTAATTTAAATTGTCAACTTTACCGAACATTTTGATAATGCAGAGAGACAAGGCATCAGTGCTGGCGAAAACAATCGAATATATGAAACAAATGCAAGAAAAAGTGAGGATGCTTGAAGAGCAAGTAGCAGCCAGTGTCAGGAATGTTGAGGCTGATGAGCTTCCGAACGAAAAGTCTAAGCTTGTTTCAGCTTCGACCGTTGATGACCGAAACCTAATTGTTGATATTCAAATTTCCGGAAACGCATATTTAATCAAAATACATTGCTTTCAAGCGAGCAAAGGTACATTGGTGAAAGTTCTTAATCTTATTGAACGTCTTCATCTGAATGTGGTCACTGCAAACTCGCTGCAATTTTCAGAACAGATTTTAGATTTGACGATTACTTCTCAGGTATTTTATATTTATTTTTATGTTTACGTTCATTTTTAATTTTTTTTTTTAACTGATTCACTGGAATCGAGGTAAAAGCAGGGTTCTTCAGTGTAGAAAAATCATAGTTCTTTGACTAATATGTTTTTGTTTTAACTGTATAAAGGTTGAAGAAGGATTCCAGGTGGAGATCAAAGATCTTTTTACGAGTCTAAAGATGGAATTAAAGAATGAATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250782.1	3.3e-37	transcription factor bHLH18-like isoform X3
Swissprot	Q9T072.2	1.5e-21	bHLH transcription factor bHLH025
trEMBL	A0A1R3L5E7	2.4e-37	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37850.1	40.70	3e-26	115		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g393847	AT4G37850.1	199	97	8	95	277	133	326	40.70	3e-26	115
g393847	AT2G22760.1	179	96	4	109	275	118	294	38.55	3e-25	112
g393847	AT2G22770.1	240	137	5	71	275	81	318	27.50	5e-22	101

Ortholog group

Species	Genes
Allium cepa	g393847.t1
Allium fistulosum	AfisC6G02407
Allium sativum	Asa0G03030.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	110	156	37.7	1.3e-09

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network