result

Gene information

Detail information of g395218

Location

Gene	Chr	Start	End	Strand
g395218	Scaffold_76161:HRSCAF_459247	5843	7721	-

Sequences

CDS

Protein

Gene

>g395218.t1
ATGGTAAACGAAAAGGGTACTCAAGTCGATGGGGTGCAAAGAAGCCCTGCAAATCCGACGAAGATTCAGTTACGAAGATCGCCGTGGGGAACGCCAACAATCTCTGGCGGCCAATCAGCTTCTACCAGTGGTAGCGCTGGAGGGTCTCCGTCGGTGACTGAGACTCGGGCGAGTGAGAGTACTTTTGTTACGATGAATCAGCTTGATACTCATGGTGATGATGCTGGGTCTTCCCAAGCAGCTATTAGGTAATCTGACGAATATTTATGTATTTCTTTGATTGTTTTGGAGGTAAAAATAATAATACGAGGAACATAAATTTGGTAATTGCCAGTTTATTATAAGTTATGCGACTGATACATGAAGTACGCTAATTTGATAATATAACTTTTTAATTGTTAATTTCTAATTTTTAAATGAAAAATATGTTTAATGGGCCGAATGATATTTGATAGCTTATTTCCATCTCTGTTTCATTTTGCAACTATATATGAAAAGATAGCAACTGGCAATGTTCTGATAAGTAATATGCATAGTTTTAGGCACTAACATACTGTGTACGTATGAGGTTGTGTGAAGAAAGTTGTTGATTTATTAGCACTCAATGGGCATGGCTTCATGCTTTCATGCCTTTATTGACAGTGGGAAAAGAAAAAAAAGAGGGCCAAGAGCAGCATCAGGTGACAAAAGTGGGAGGGGACTCAGGCAATTTAGTATGAAAGGTGATCCTAGCTCACATGTTATTGTAAAGTTTCATCCAGATCATACTATTATCCAGATCATACTATTACTTCTTTTCAGACAAATGTTTATTTACAACTAACTTTGCCACTCAGCGTTAGTATTTTCATAAGTAGAAGATAGCCTTTCTACATTCTGGTCCTTAATGTCTGTATTATCATGGTATAGTTTGCGAGAAAGTGGAAAGCAAAGGGAGAACCACCTACAATGAGGTCAGATTGGTCTTTCTGCTGCTTTAAATGCATATCTATTTTGGTTCCATGTTTTGTTTGTCTTATGCCAGATACGTGTTCCATAAAATTAGTAGCTCATGCAGTTCGATTAGTGGTAACATCGACAATAGTTTCTTATGTATGGAAACCCTAGACCTAACCTTTTCTTTGACCTACAAGCACATACTGTATTGAAAAGTTTAGGAATTTGAGTTTATAAATTTTCCATCTATAATTTTGTTACCTACTATTTTATGATACAAACCAAGTCCATAATCCATCCACACAAACACTTCTTTTACATATTTAATGTTTTCCTAGAATGTATAATATGGCTATATCGATGTGCCAAGTTGACTTCCAACTTGCTTGAGCTTAGCATCATGTTGATTCTGACTTTTCATACTTTGATGCTTTAATTGTATTTCTTTAGGTTGCAGATGAACTTGTGGCTGAGTTTACTGATCCAGCTAATAATATTCAATCACCAGATCAGGTAATTTGCTTTCCATTATTGAGGGGAACATCTTTATGTGTTGATTTAAAATGAATAGGTTTTCCTCAATTACAGCAACAATATGATGAAAAAAACATAAGGAGGAGGGTCTATGATGCTCTTAATGTTCTTATGGCAATGGATATCATATCGAAAGACAAGAAAGAAATCCAGTGGAAGGGTTTACCTCGTACCAGCATGAATGACATTGAAGAATTAAAGGTTTGTGTGACATGTTATAATGTATCTCAAATTTCGATCCTTAGTGGTTCGGAAGCATTTCTTGTCTGTACTATTCTTCCATATTTCCCTCCTACTTACTCTCTTTTGGAAACTTAAAATTTAGACAGAACGCGATGCACTGAAAAGCAGAATTGAGAAGAAGGCCGCATATCTACAAGAATTGGAAGATCAGGTAATTCTTGTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008775137.1	3.2e-75	transcription factor-like protein DPB
Swissprot	Q9FNY2.1	8.2e-60	E2F dimerization partner protein B
trEMBL	A0A8B7BEM6	2.3e-75	transcription factor-like protein DPB

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G03415.1	71.07	5e-70	260	ATDPB;DPB	Transcription factor DP

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g395218	AT5G03415.1	197	48	3	29	219	27	220	71.07	5e-70	260
g395218	AT5G03415.2	197	49	4	29	219	27	214	67.51	9e-64	239
g395218	AT5G02470.3	121	51	1	99	218	50	170	57.02	7e-37	150

Ortholog group

Species	Genes
Allium cepa	g395218.t1; g395219.t1; g72762.t1
Allium fistulosum	AfisC3G03580; AfisC3G07690
Allium sativum	Asa0G04987.1; Asa0G04988.1; Asa2G02870.1; Asa2G06359.1; Asa6G00659.1
Arabidopsis thaliana	AT5G03415.1; AT5G03415.2
Oryza sativa	LOC_Os03g05760.1; LOC_Os10g30420.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02319.17	E2F_TDP	Domain	100	181	89.1	1.3e-25

Gene Ontology

Accession	Ontology	Name
GO:0006260	P	DNA replication
GO:0000082	P	G1/S transition of mitotic cell cycle
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0000278	P	mitotic cell cycle
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006259	P	DNA metabolic process
GO:0006261	P	DNA-dependent DNA replication
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007049	P	cell cycle
GO:0044772	P	mitotic cell cycle phase transition
GO:0046983	F	protein dimerization activity
GO:0008150	P	biological_process
GO:0009058	P	biosynthetic process
GO:0009059	P	macromolecule biosynthetic process
GO:0009889	P	regulation of biosynthetic process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0022402	P	cell cycle process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0044770	P	cell cycle phase transition
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0034645	P	cellular macromolecule biosynthetic process
GO:0042023	P	DNA endoreduplication
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0044786	P	cell cycle DNA replication
GO:0044843	P	cell cycle G1/S phase transition
GO:0046483	P	heterocycle metabolic process
GO:0046982	F	protein heterodimerization activity
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0090304	P	nucleic acid metabolic process
GO:1901360	P	organic cyclic compound metabolic process
GO:1901576	P	organic substance biosynthetic process
GO:1903047	P	mitotic cell cycle process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04683	TFDP1; transcription factor Dp-1	EC:-	TGF-beta signaling pathway	ko04350
K04683	TFDP1; transcription factor Dp-1	EC:-	Cell cycle	ko04110
K09392	TFDP2; transcription factor Dp-2	EC:-	Cell cycle	ko04110

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network