result

Gene information

Detail information of g395837

Location

Gene	Chr	Start	End	Strand
g395837	Scaffold_76235:HRSCAF_459321	6129	7366	+

Sequences

CDS

>g395837.t1
ATGAACTCAGACGAAGTTATGGACAAACAAGGTTTGGAATTTAAAGCGGTAGGTGTAGAAGGAATGAAATTTGGTGCATCAATCTCACTAGGAGAATACGTAAGTTGGCTTGAATGGATGTTCCCTTTGGACGAAGCAGCATTTGCAAAGCATTCCGCTCGAAGAGATCAGCTGACTAGAGACATAATGAACGAACACACGATTGCCCGTAATAAAAATGGCGCCAGACAGCACTTTGTCGATGCATTGCTCACTCTTCAAGAAACGTACGACCTCAGCGAACATACCATCATCGGCCTTCTATGGGATATGATAACAGCTGGAATGGACACGACAGTTATCGCTGTGGAATGGGCTATGTCAGAGATAGTAAAAAATCCAAGAGTACAACAGAAGGTGCAAGAAGAGCTTGATAGAGCGATAGGAGTAGATCGCATCATGAATGAAACAGACTTTGCTAAACTTCCTTACCTACACTGCGTTGTGAAAGAAGCTCTCAGACTGCATCCTCCTACTCCACTGATGATCCCACATAAAGCCTCAGCTAAAACCAAAATAGGAGGTTATGACATCCCTAAAGGATCGATAATCCAGGTCAACGCATGGGCCATAGCCCGCGACCCATTGTTGTGGAAGGATCCATTAGAGTTTAGGCCAGAAAGATTTGAGGAAGAAAATATAGATATAAAGGGGAATGATTTCAGGGTGCTGCCATTTGGAGCTGGGCGTAGAGTCTGCCCAGGTGCGCAGTTAGGCATTGTATTGGTAGCATCGATGTTGGGCCATCTGTTGCATCATTTTGAATGGAAGCTTCCGGAAGGGATGAAGGCGGATGAAGTGGACATGAGCGAGGCTCCAGGGTTGGTGACTTTTAGGAGTACCCCGCTTCAGGTTGTTGCGATGCCAAGCGGCTATATAGGTAGAACTGCTCTCGAGCCAGTATGGAGCTTAGTATATGAGAGTTTAATAAGTGTTGCGAACAATCCAACACATCGTTCTGAAATGTCATTATATAGTAACTTATATAGATGGGCAATGAAGTGA

Protein

Gene

>g395837.t1
ATGAACTCAGACGAAGTTATGGACAAACAAGGTTTGGAATTTAAAGCGGTAGGTGTAGAAGGAATGAAATTTGGTGCATCAATCTCACTAGGAGAATACGTAAGTTGGCTTGAATGGATGTTCCCTTTGGACGAAGCAGCATTTGCAAAGCATTCCGCTCGAAGAGATCAGCTGACTAGAGACATAATGAACGAACACACGATTGCCCGTAATAAAAATGGCGCCAGACAGCACTTTGTCGATGCATTGCTCACTCTTCAAGAAACGTACGACCTCAGCGAACATACCATCATCGGCCTTCTATGGGTAGTGTACCACTACTACTTCAACGTGATCATAGTTATTATAACTTTGAAGTCTCAAATTTTAAATAACTACATGTGTAGGATATGATAACAGCTGGAATGGACACGACAGTTATCGCTGTGGAATGGGCTATGTCAGAGATAGTAAAAAATCCAAGAGTACAACAGAAGGTACTTATTCTTCTTCTTATTCTTCAAATAGTCCCACATCGTGTAAATAAGTAACATGATGGATTCTGTGTAAAATATGAAGGTGCAAGAAGAGCTTGATAGAGCGATAGGAGTAGATCGCATCATGAATGAAACAGACTTTGCTAAACTTCCTTACCTACACTGCGTTGTGAAAGAAGCTCTCAGACTGCATCCTCCTACTCCACTGATGATCCCACATAAAGCCTCAGCTAAAACCAAAATAGGAGGTTATGACATCCCTAAAGGATCGATAATCCAGGTCAACGCATGGGCCATAGCCCGCGACCCATTGTTGTGGAAGGATCCATTAGAGTTTAGGCCAGAAAGATTTGAGGAAGAAAATATAGATATAAAGGGGAATGATTTCAGGGTGCTGCCATTTGGAGCTGGGCGTAGAGTCTGCCCAGGTGCGCAGTTAGGCATTGTATTGGTAGCATCGATGTTGGGCCATCTGTTGCATCATTTTGAATGGAAGCTTCCGGAAGGGATGAAGGCGGATGAAGTGGACATGAGCGAGGCTCCAGGGTTGGTGACTTTTAGGAGTACCCCGCTTCAGGTTGTTGCGATGCCAAGGTTGGAGCCGTATTTGTACAAACGTGTGACAGCGGCTATATAGGTAGAACTGCTCTCGAGCCAGTATGGAGCTTAGTATATGAGAGTTTAATAAGTGTTGCGAACAATCCAACACATCGTTCTGAAATGTCATTATATAGTAACTTATATAGATGGGCAATGAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	A0A2H5AIX6.1	4.0e-141	RecName: Full=p-coumarate 3-hydroxylase; AltName: Full=Cytochrome P450 C3H
Swissprot	O48922.1	7.4e-132	Cytochrome P450 98A2
trEMBL	A0A346TLE7	1.1e-140	Coumarate 3-hydroxylase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G40890.1	69.64	2e-132	469	CYP98A3	cytochrome P450, family 98, subfamily A, polypeptide 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g395837	AT2G40890.1	303	91	1	1	302	192	494	69.64	2e-132	469
g395837	AT1G74550.1	296	142	5	9	300	189	477	48.31	5e-80	295
g395837	AT1G74540.1	300	147	4	1	297	186	480	48.33	1e-77	286

Ortholog group

Species	Genes
Allium cepa	g18669.t1; g395836.t1; g395837.t1
Allium fistulosum	AfisC3G03413; AfisC8G05554
Allium sativum	Asa1G00317.1; Asa2G02797.1; Asa2G02803.1; Asa2G02806.1; Asa2G02809.1
Arabidopsis thaliana	AT2G40890.1
Oryza sativa	LOC_Os05g41440.1; LOC_Os05g41440.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00067.19	p450	Domain	30	287	240.3	3.3e-71

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0005739	C	mitochondrion
GO:0004497	F	monooxygenase activity
GO:0005783	C	endoplasmic reticulum
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0055114	P	oxidation-reduction process
GO:0016491	F	oxidoreductase activity
GO:0006576	P	cellular biogenic amine metabolic process
GO:0006595	P	polyamine metabolic process
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0008216	P	spermidine metabolic process
GO:0042802	F	identical protein binding
GO:0009058	P	biosynthetic process
GO:0009308	P	amine metabolic process
GO:0009698	P	phenylpropanoid metabolic process
GO:0009699	P	phenylpropanoid biosynthetic process
GO:0009804	P	coumarin metabolic process
GO:0009805	P	coumarin biosynthetic process
GO:0009808	P	lignin metabolic process
GO:0009809	P	lignin biosynthetic process
GO:0009812	P	flavonoid metabolic process
GO:0009813	P	flavonoid biosynthetic process
GO:0009987	P	cellular process
GO:0012505	C	endomembrane system
GO:0016705	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016709	F	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
GO:0018130	P	heterocycle biosynthetic process
GO:0019438	P	aromatic compound biosynthetic process
GO:0019748	P	secondary metabolic process
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044106	P	cellular amine metabolic process
GO:0044237	P	cellular metabolic process
GO:0044249	P	cellular biosynthetic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0044550	P	secondary metabolite biosynthetic process
GO:0046409	F	p-coumarate 3-hydroxylase activity
GO:0046483	P	heterocycle metabolic process
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0072532	F	tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity
GO:0072533	F	tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity
GO:0072547	F	tricoumaroylspermidine meta-hydroxylase activity
GO:0072548	F	dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity
GO:0072549	F	monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity
GO:0072550	F	triferuloylspermidine meta-hydroxylase activity
GO:0072551	F	diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity
GO:0072552	F	monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity
GO:0097164	P	ammonium ion metabolic process
GO:1901360	P	organic cyclic compound metabolic process
GO:1901362	P	organic cyclic compound biosynthetic process
GO:1901564	P	organonitrogen compound metabolic process
GO:1901576	P	organic substance biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09754	CYP98A, C3'H; 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase	EC:1.14.14.96	Phenylpropanoid biosynthesis	ko00940
			Stilbenoid, diarylheptanoid and gingerol biosynthesis	ko00945
			Flavonoid biosynthesis	ko00941
K15506	CYP98A8; cytochrome P450 family 98 subfamily A polypeptide 8	EC:1.14.13.-	Phenylpropanoid biosynthesis	ko00940

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network