result

Gene information

Detail information of g399699

Location

Gene	Chr	Start	End	Strand
g399699	CHR2	111804966	111806935	+

Sequences

CDS

Protein

Gene

>g399699.t1
ATGAACAAGCCAGCTTGTGGATCGGAGGAAGAGTTTTCATTTTGCAGCGCTGAAGATGGAGAAGATGGAGAAGACGAAGGAAGCAAATGTAAGTCCAAGAAGCTTCAGCTCTCGAAAGAGCAGTGCAGATTACTGGAAGAAAGTTTCAGGCACAACCAAACTCTCAACCATGTGAGCATAAATATCGTTTCTGCTTCTAAATAATTTTCCATGGTTCATTACTGATTTAGTACTTTAGTTGCCAAAGGCATAACTTAAGTTCTATTTTTGGCTAAGGAGATGAAGCAAACAGTAGTAGCATATTGTTTTTACTCTGGTTTGTAAAGGCTCTACATGTACTTTCATAAAGCGTTTCGTCTTCTTCAGCTAACTAGAATTATATTAATTAGATTCTATTATTTATAGAAAGGAAAAAAAAAAAACTAAGTCGTTTAACATAATTCTACCTGGTTGAAATGTGCATCATCTAGGAACAACTGGGGAAGCATGGCTAGAATTTCTTAGCTAAAATTAATTATAGACTAGGTAACCATAATACCATTGCACAAAGTAGTTAACTCGGTTCTATGAAATCCCTAGTCATTAGCATTTAACAAAATTTAATTATGTACAAATTCAAATTCTTGCCAAAGTTATTATCGTTGTACTTACAAAAGAGGCCACAAGTTTAAATCAGAGTCATGACATTTTTCTTCATATTTTTCCAATATATTTATGCTTGTTATATTTTCAATATCAATCCAATTTTTTCGAATATTCATTCTTCACGGTATTGTTTTACATTCATACGTTAATACGCAATATTCTATGGGTTTTTTTTAATCCACTTTCATGTACAGTAATTGTTATATTTAAAACTGCTATAGAATTTGATGATTTAAAAGCAACATATTTTTTAAAGATATTTGCACGTACATGTGCATCATCTGTGTTCTAGTTTAGGATAGCGGAAATTTCGCTATGCAAGTATTGCTCTATTTTAGTAATAAAGTACAATTTTCTATCTTTAATATGAGAAATATTATAATATGTTAGAACTGTATTTTCCGTTTGTTATGGATTACAGAGGTTTTGCATACTGAAATATGAACTATCTACAATTTGGGCATATTCCAATGTAATGGTGAAAAGAAAACTTATTGAATGAATCCTGCTGATTCTTTTTCAAGTCTTCCGGAAATAGTTATTCCTTAATCAAATTCGAAAAAATAAAATAAAATGAATGAATGAGTGACATCTAATTGACAAGAACAGACGTGGGCAACAAATTAAGTATTTTTGAGATAGTTTGCACAAAGTTAACGAAATTGTAATTGTCAAACGAAATTTTAGTTCCATTAGTAATACTCCGTCAGAAGTAGGGATTAAATGACACAGCACGCATTGAGGATAATTCAAGATCATGTATCTCTGTATATGATCGGCCAAAAATACATTTGGTTACATATTTATATTTAGGCCTAGGTACCTGATGTATATTATTGGATACATTGATTATCCAATATTACAACTAATCATAACCATAATGTAATGATCCTCTCAGAAACAAAAGGAGGAACTGGCATCAAAGTTGAAGCTGAGACCAAGGCAGGTTGAGGTCTGGTTCCAGAACCACAGGGCAAGGTGTGTATTTCCAATTTATGCTTAAAAGTGCTATTTGAGTACTTGAAATTCCAATGTCAATACCTGATTGTTTGAACATCAAGCTGAAATGTGCTTTCAGGACTAAACTGAAGCAGACTGAAATGGAATGTCGCTACCTGAAACGGTGCTTTACATTTCTAAGGGAAGAGAATCAAAGGCTTCAGGTAGAAGTGGAAAAACTTCGTGCAATTCGTGCATCTCCTCCAACTGTCATATTACCAGACACTAACAAACCTATTTTTGCGTCGGAGCTTTCTCTGTGCCCAAGGTGTCAATGCTTCACAGCTTTCGCTAGCAATGGAAGAAAGGATGAGAGAACTAATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	PKA55517.1	2.2e-44	Homeobox-leucine zipper protein HOX3
Swissprot	Q0JKX1.1	1.2e-39	Homeodomain transcription factor HOX3
trEMBL	A0A835PRT9	1.4e-45	Homeobox domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G01430.1	59.86	2e-39	157	ATHB-17;ATHB17;HB17	homeobox-leucine zipper protein 17

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g399699	AT2G01430.1	147	48	3	16	159	119	257	59.86	2e-39	157
g399699	AT3G60390.1	137	59	2	13	149	142	273	53.28	3e-32	134
g399699	AT1G70920.1	137	49	2	21	157	58	180	54.01	5e-32	133

Ortholog group

Species	Genes
Allium cepa	g399699.t1
Allium fistulosum	AfisC2G06199; AfisC8G04285
Allium sativum
Arabidopsis thaliana	AT1G70920.1; AT2G01430.1
Oryza sativa	LOC_Os01g45570.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	32	86	60.4	9.8e-17
PF02183.15	HALZ	Family	88	120	33.6	3e-08

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0008150	P	biological_process
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043565	F	sequence-specific DNA binding
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09338	HD-ZIP; homeobox-leucine zipper protein	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network