result

Gene information

Detail information of g400580

Location

Gene	Chr	Start	End	Strand
g400580	Scaffold_76771:HRSCAF_459857	186866	190282	+

Sequences

CDS

Protein

Gene

>g400580.t1
ATGGCGGCAGGACAGAACGGGTCATATCGCGAATCCGGTTTAGAAGCTTCTAGAAGAATCAGGTATGAAGATATTAGATCTAGAGAATCTAGGGTTAGGGTTAGTTCAAGAGAGAGGAACGAAATTAATGGAAAAAATTATAACCGGGATCAAATTCATTCAAAATCGAGCGATCGTGAGCCTGGTGAGGTTTCTAGTGGGGAGGAGGACTATAAGGCTTCCAAACGAGAAGATAAAAGGCTTAAATTTTCACCTATAGTTTGGGATAGGGACGACAAGAAGCAACCTCCGACTGCAACTACTTTGAGAAATGGTAGCAACGGGCTTCCTCCGCCTCCACCACTTCCTAAGGATTTTGTACCTGGAACATCAGAAACTGGAAAATTTTCAGCTAATGTCAAAATGAATGACGAACATGAGGTGGAGGACGGAGAAGCTGGATTGTCTAGGCATATATCATCTTCTAGATGGGCCGATAGCGATGATAACGATGAATCTAACACAAATATAACTAAAAAGAGGAAAATTACACCATTAGCAGACAAGAAGATAAGCCCTGAAACTGAAGAGGTGGTTGTAAGGGAAGAGTCTAGGCATATTTCATCTTCAAGATGGGCTGATAACGATGACAACTATGAATCTAATACAAGTGTAATCAAAAAGAAGAAAACGACGCCTTTAGCTGATAAGAAAAGTAGTCCGGAAATCAGGGAGAAGGTCTTAAGAGAAGGGTCACAGGGTAATAATTCTAAGTCAACGGGTTCGGGTAGGGATGATAGGGATAGTGATAGAGAAAACGAGGTTGACAAAGATGGTTACATGGACATAGATGGGACTGATGATTACCAGAGTGATCATAATTCTGATTCAGAAGATGAAGATGGAAAAACGAGTTTGGTGCCTGCTACTCCACCTCAAAGGAGTATAAATATGTTGCAAGGTTGTAGAAGCGTTGATGATTTTGAGAGGCTGAATAAAATTGATGAAGGTACTTACGGGGTTGTTTACAGAGCTAAGGATAAGAAGACTGGGGAAGTAGTGGCATTAAAAAAGGTGAAAATGGAAAAGGAGAGAGAGGGGTTTCCATTAACTTCTCTGAGAGAGATTAATATTTTATTATCGTTTCATCATCCTTCAATTGTAGACGTTAAGGAGGTGGTTGTTGGTAGTAGTTTGGATAGTATATTTATGGTAATGGAGTATATGGAGCATGATCTTAAAGCTCTTATGGAAACTATGAAACAACCGTTTAGTCAAAGTGAGGTCAAATGCTTAATGTTGCAGTTATTGTCAGGTGTAAAATACCTTCATGATAATTGGGTTCTTCACAGGTACTTGGGCATCTGAAGATTACTCTAAGTATATCAGTTGTTTGTTCGTTCCGGCTTTTATCCCCTGTTTACACAATTAACTAGGCTGGGGCATTCATTTGATTAAGGAGTTTCTACAATCTGCATTAAAATATTTCAAAGATTTATCTCATGAGCCTTTCCCATTTGTCAATTCTGTGCTTCTTAACTAGCCTTCAATATACGAGCCGTCTCCCAGTATTAATTTTGTTTCTTTTAGTTAATCATCCTTTCTTTACACTATTACTTAGTTTGGGGTGTTACTATATTTGATTGAGTAGTGTATCTCATATGCATTAACACAATTCCTAGTATATCTTTCATGATCCCACTTTCCTTTTCACCACTTTTTGGAGAAGATCATTTTAGGATATAGGGTTAATTTTGATAATTTACACAAAACTAAAAAAAGAAGTAAACTAGCTCATGTATGTTTCTCTTTTTTCCCCGTTTGTAAAAAAGAGATCTGAATAGATGAGTAATGAATTGAGGGTGTAATAAAGTAAATAGTACATACCTTCAATATATTGCAGCTGTTTGAATTGAAAATCTTCTTTTGTCCAGGGACTTGAAGACATCAAATCTTCTGCTAAATAATCAAGGTGATTTGAAAATTTGTGATTTTGGTTTATCTCGTCAATATGGTAGCCCACTAAAGCCATATACTCACCTTGTGGTAACTTTGTGGTACAGGTACATCCCTTTTCCTTTCCTCCCCTACCTCGCTCACGCGCGCGCACACACTTTTTTATTCAACTGTTAAAACTCACCATGGTTTTGTGTTGGCAGGTCGCCTGAACTTCTACTAGGAGCAAAAGAGTACTCAACTGCTATTGATATGTGGTCTTTAGGATGTGTGATGGCTGAACTTTTAGCTAAAGAACCATTATTTAGTGGCAAGTCCGAGTTTGACCAGCTCGATAAGGTAGACTTCACGATTTTACAAATATTTGTTAAATTCAGTTTCCAGATGTCATATTGGCTCACAGCAACCTCGCTTACATGCAGATATTCAGAACTCTTGGTACCCCGAATGAGAAAATATGGCCTGGGTTTTCAAAGTTGCCTGGAGTTAAAGTTAACTTTGTCAAGCAACCGTAAGTTTTCTGTATCTATGATGTGATGTTTTTAATGATATAGAATGCATTCTTATGAACCAACACTTTTTCCCAGGCATACGCTATGAGTGATCTTGCTCAGGCTTCCTGGCTTTACTTGGTGGCACTTTTCAATTAGGTGATGAATTGCTCAAATTTTTAGCAACTGAGATTTTTCGTATTGTATTCAGGTATAATAGGTTGAGGGAGAAATTTCCACCAACTTCTTTTTCTGGACGCCCAACTTTGTCGGAAGCTGGATTTGATTTGCTGAACAAACTTCTTACTTATGACCCTGAGAAGGTAAGATCTACTTCTATTTCCTACATTTCATACATCATTTTGCTCTTTCTTTTTCGTTTTTTTCTTCATTTAGCAGAGTACCATTCTAATATTAATTTTTATACATATTTCATGTAAATACTTACAGCGGTTAACAGCTGAAGCTGCTCTCAATCATCCTTGGTTTCGTGAAGTTCCTTTGCCCAAATCGAAGGATTTTATGCCTACATTTCCTGCTCAACATGCACAAGACAGGTTTCATTTTTGTCCCTGAGCATTTATTTTTCATTGTCATTTTAATTGATTTTTATATGTGGTAACTTGCCTTATTCCAAAAGTACGCCGAATGAGTATATACCTAAGCGCATCTAGTTTATTTAGTTGGTGGGGGCGGATATCATAATTTTCTTTATTTATAAGCAGTTTACCATATAGAATAGCGAATGCCCTTTTATGCGCTTGACCGTAGAGAGATGTCTAAGTATACCATGAATAATCTTGAGATTTCTTGCAATTAACCATATACTTTATTCATGTCATGCAGCACATCAACTATTCTCAACCTGCTTTTCTTTTGCATATTTAGGCGTCTGCGAAGAATAATGAAGAGCCCAGATCCTCTAGAAGAGCAGCGAAGAAAAGAATTGCAGCTAGGTGATAAACTAGGATCTGGTGGGTTGTTTGGCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020261534.1	1.6e-231	cyclin-dependent kinase G-2 isoform X1
Swissprot	A2XUW1.1	5.7e-181	Cyclin-dependent kinase G-2
trEMBL	A0A5P1F2W5	1.1e-229	cyclin-dependent kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G67580.1	59.85	0.0	719		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g400580	AT1G67580.2	670	195	15	54	668	102	752	59.85	0.0	719
g400580	AT1G67580.1	670	195	15	54	668	102	752	59.85	0.0	719
g400580	AT5G63370.4	615	277	14	27	628	26	609	47.80	7e-144	508

Ortholog group

Species	Genes
Allium cepa	g400580.t1
Allium fistulosum	AfisC4G02860
Allium sativum	Asa4G02248.1
Arabidopsis thaliana	AT1G67580.1; AT1G67580.2
Oryza sativa	LOC_Os02g39010.1; LOC_Os02g39010.2; LOC_Os02g39010.3; LOC_Os04g41100.1; LOC_Os04g41100.2; LOC_Os04g41100.3; LOC_Os04g41100.4; LOC_Os04g41100.5; LOC_Os04g41100.6

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	321	612	252.7	3.2e-75

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0051726	P	regulation of cell cycle
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007346	P	regulation of mitotic cell cycle
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0010468	P	regulation of gene expression
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019222	P	regulation of metabolic process
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0097472	F	cyclin-dependent protein kinase activity
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08818	CDC2L; cell division cycle 2-like	EC:2.7.11.22	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network