result

Gene information

Detail information of g401133

Location

Gene	Chr	Start	End	Strand
g401133	Scaffold_76854:HRSCAF_459940	684281	695381	+

Sequences

CDS

Protein

Gene

>g401133.t1
ATGCACCGTCTTCAAGTTGAGCTCGGAATCCAGAACGTGGGAGCTGCATATCATTGCGACGGAGGAGGGGTCGATGCCCAATTAGACGGATTGGTACATATCCCTATTTTTTGTACCAAAATGGCTGAGATCGATATGGGATGACATGGAAGGCCCCGTAAGGTACATTTTAAATTTTTAGTCGTTTGGAGTTCGTATGGTCGAGTTATGGGTAAAAGAAGATGGATCGGTGTTAATGGATCTTGGAGTTCGACCCGAGAAAATTTGCTATTTTCTTAGAGTCGGCACATGGTTCAATTGAAGTCATGAAAATTTAAAGTGTTGGGTTAGTAAAGAATGGGGCTTGGAGTCATTTGCATGTTTGCTTGGGGTAGGTACCAAACCCTGGGTACAATTCGGCGATGAACACTACTTGGAGTCAAATTGAAGTTTGCTTGGAGAAAATCTTATTTTCACTCGAGTCTAACTTCAGGTCAGAATTTCCAGAGTTTGCCTCGAGTCAAATAGGTGATTACTTTGGGTCTGACTTCGAATCAACCCTAAAGTGAGTTTATCGATGACCTTTTCAACCTTTTCGACGATTTTCGACGATGACCGCTCGTGACTCGATGATGGAAGTTCCAGGATGGGAAGTATGGCTTTGATAATGGATAGCTACACTTCGAGAGGAAGAGTAGTTGACGATGAGTCAGATCGAGGGAACTGATAGAGGTAGGTTATAAGGACCTTTTTTCTCTTGGATTTGTTTCTACAATTCTGCACGAGTCTTATAGAGCTCTCTTCGCAATTTCTCTATATCAGCATTAGTTATCACATCATAAGGGGCCTACAGCTAGGGACTCCTTGTTGCATTCCATCGCCTAGAAGAGCAATCTCCGTGTTCTTTACTACTTCATTGGTAGACTGTGAGGAGGTAGCGATGACCATTTCCTTCCTAAGAGGCACTGTAGATAGCTTCCTTCTAGATCTTCTTCAAATCTAAGTAGAAATGGAAACTTGTCGGTAGAAATTTGGATCTATCTCATGGATTATAGGAATCCACAAGTTGATAATGAGATCCAATCAAGCTGAAAATTCGTTCTCAATTAAATGAAGAATAAATTTTAAATAGATCAGAAAAAGTAAATCAAGCGCAAAATTTTTAAGTGGTTTAGTAATCTTGGCTTACATCCACTTGATTCATTATTGATCTTGCACTAGTTGTTTGATTATAAGAGATTTGGATCAGCTAGGATCTAGTAGTACAAGAGAGATCCCTCCTATGGGTCCGTCATGGTGCTAGCTTAAAGTTTCCAAAGTTGTGTGCATAGTTACCTTCATGATTTTAGAGACATCGATCAATTTCCATTGAGTTGAACTGATAGGCTGATATGATTTAGGGGAAGTGATACAGTCCGATCCCCTGCCTAGAGGAAGGGATACGATCTGTTCTCCTGCCTAGGGGAAGGGAAAGGTACTGATCCCCTACCTATGGAAGGCACTAATCCGTACTTAGAATATTCTAAAGAGTCCATCTCTTGGTCTCACTTGACCATTGTTTCATACCATTTTCTATGATTTATCTTTGGACTCCATGATCACTTCTCTGTGTTGCTTGCCTCATCTATCATTGAGTCTAACTTATCTAGTCAATCTGGATATAGTCGGGTCAAAATCCGGATAACAAATACAATAGCACAAACCACAATGGTGCCGCAGAAGCAACCACTGCCTCTAGCCGATACCTTGTCCTGGTCGAGGATCTGGATTAGATATAGTAATCCCATGATCGAGATGGATTAGAATAAGGTTTGCTTTCCGTACTTTGTTTTTACTTTAAATAAACCATGAAGGATTACTAAAGGGATGCATACATATGTGTGGGATACCAAATGGTCCCACATGCATGCTTTGGGTTACCGTCCGAGGGTAATCTTTGATTGGATTAGATGTTTTGATTTTTTTTCATGATGCACTTTTCTTTTTAAAAAGATATATGGATGATCTGATAATGGATGTTAAATGATATTTGATTTTGATATGATGTATATCATCGGAACGTAGTTATCCTTGTATTTATAGATAAATAGATAGAATATAGTTTCTCGGACCGAAGAGATGGGGCGACATATCAAGAAATGCAAGTCTCATTGCCGGAGAGTGAGTTGATGGACTTGCATATGATGGCAAGTCCCTTCATCAAAGAGTGAGCGGATGGATATGCTTAGGATATTAGGTCCCCTCACCGAAGAATGAGCAGATGGGCTTAATCAAGATTTATGATTACACAATCTAGGGAGATCAAAAACTAAATTTTAGGATTTGAATGCCTTTTGATTTAAAATGATTTGATAATGGTTAATAAATGACTAATGATGTCATTGTCTCAATTCGGTTGGACCTTCTTATAATGGGATATTATGTGTTACTAAACGATTTATAAGAATTGTTCCAATCGATGGCAATGTTCATTATGATTAATGATGCATGATAGCTTAACGCCTCGTATTTTGGCTTTAGTTATTTAATTACGCCTCGAAAACGAAATTTTTGCAAACGTTGGAATTTGACCACGAAACTTACATCATTGCGTTGAAATTCTGAGCAACTTCAATATTTGGAGTTTTGCGATCGTAGTCCATACCAAAAAGTTATGGATGAAAAACGAATTTGGAACAAAAATAATTAAATAAGAAAAATTGTTGTTTATTGATTAATCATCCAGGCCCACAGGACGACTTGTCATTGGGACCAGTCAACCTCTAGCGATCAGATGGTGCTCCAAGGGCGGTCGACTAGTCGCCTTAAGATGGCTAGGGTTAGCTTAGGCCACAACAGTCTGGATTTAATATTTCAAATCGAATGATTCTGGTTGATTCTAGTGCCTATAAATTCAGGCCAGGCCCTCCCTTCTCTTCTCATATTTTTATGGAGGCAATAGCGAAGCTCTGTCATTTCTTCTTCTCCACTTTCTTTCTAAATTATAAAGATAAGATATTGGTTTCTATAATCATACAAATCGGAGAAGAATAGAAATCTAATAAAAATAAGAAGAGAAGAAATAAACCATATGCGTATTTGAGGTGATTTACATATTCTCTTCCTATCCCAAATCTTTTCTTAGATCCGTAATTCTAATGTATGTATATATCCTTTCATACATATCTCTTGGATTAAAAAGGATTTGGAGAAGAATCAACGGTTCTACTTTATATCTAGAGATTTGGCTCGCTTTTAAAAGGTGAGTGGGAAGTTTTATATATTGTTATAATATGGAAATTATCCCATTGGTGTTTATTTGATTTTTATGCATAATTGGATAAGTGTATATAAGTTGTAGGCAACAAATTGAATATAATAACTATCGCCTACATATCTTGTTTATGAATTGGTTTAGAATTGTTTACAACCTGATCTAGAAATTAGTCCCAAAAGTATGAATTTAAAATATTGATTTGAATGAAATTTATTCCTTATCTGAAATATGTTGTATAATAATTTAATAATTTTGATTCTTACCATGATCTTATTGGAATGTAAACTTTCCTACGTTTGGAATTATTGGAATTTAGATTCATTTAATATCAGTAAATTAGTTTGATTTTTTTCCTTTTAAAAAATATAGTATTTAATCTAACAAGGAATAGATGCAAATAGAAAGAGAAAGAGATGTGTAAAGTATGAATTCATTACAGTTTACATTGTCTATCTCAGTAATAAAAAGAATGATTATTCCATGTAATTTCAAACAATGTAATCTTTTAAAGTTAAATATTTTATTTTGGACTAACTTATGGAAATTATAGTGGATAATCGTTTTAAATATGATTCCAACAATTTACATGGAAAAGATATTCTACTAAAGATATATAAGTAGAATATATTTGATAAAAGTAAATAGTTGTACGTAATTTACTGCGCTTGTAATAATTAAACAAAAAGCTAATAATTACGCTTGCACATAATATTCACATTTAGGATAATTAACTAATGAGAAAAAAATTTAAAAGGTTGTAACTCCAATGAATAGTAATAAATATAGGAGTTACAATAATCTGATAGTGTAAATAGATTAATGGGACTGATAAAATGGAGTAGATATATAAGGTTACTAATTTGAAATTAGTAACCTTGCATAAATGTCTTAGGAAACGTCCATTAGGATTTTGTGGACAAATTGACATTTATGAACATTAAACGGAGGTTTATGGGTAGACAAATATTTTAGGTAAATCTTACTGTCTTAAATAAAAAGGAAATTAGTAAGCTAAGTCCAATGTCTACCTAAGATAATATAAGTAAAGACTTAGGATAGTAATTGACTTAGTAGGTTAGTGATGCAAGGTCAATAGAGTCATTTGACGGAAAACTGCCCTTCACTTTGAGGCTACCATCAGTTGGGTGTACTTACTACTGATATGAGATATCACTAATCCTAGAACCCGTGACGATGTAAGAGATTGGGCTTACTTTCTTAATTGGAAAGTAATAAACAGTCCAAATTTGGAATTAGGAGCGGTGAGTGATACCTCCATAAGGGTTCGCTTCTGGGTTGAGGTCTTAAATGGCGGTAAGGTCCACATCTCTCCTAAATGGAAGTATTAAGTAATCTAGTGAGATTCCAAATAAATAAATAAGGATGTCTCTAAAAAGGGTTTACTTCAATATTGAGGTCTTAAGGGGCTATAGGGTCGCCTCCCTACTGAAAGAAGTAACCTAATGAGATGCCATATTTATAATGAAGGAGTGATAGTGGATATCTCATGAAGAGTTCTTCAGGTTTGGGGTCTAAAGTGACTGAAGGGTTCGCTTCTTTCTTATAAAAGAAGCATTAGGTAGCCCAATGAGATTTCCAAGCAATGTCAGCTAGATAGTACCAGTGAGGAGTCTGCCTTGGAGTTAGGTATTAAATAATAAAGGCCTGCCTATAAATAGGTATTAAATGGTTAAGGTCTTCCTAGTTCTTAGTAATGAGGTATAAATGGTTTAGGTACAGTTTCTCACATTGCTAAGGCCATAATAACAATAGTACTATTCAGGAGCACGCCTTGGGGATAGGTCTTAAATGATGGGGTCTGCCTTAATTAAGGTCTTAGATGACCAAAGTCTGCCTATTTTCTAATAAAAGGTATTAAGTGGCTTGGATACTATTTGCTACATGGCTGTGATTTTATCGACGATAGATGCGGTAAATGTTGGACATTAAATGTCCAAAGTCTTAAATAGTGGTTAAAGGTCTTATAGCTAGGACTTACCGACCACTGATAACATTTTTAGGAAACCACCTTGGGAATAGTATTAAATGATGGGGTCTGACTTGATTAAGGACGTAAATGGTAGAGTCTGACTATTTCTCTTTCTAAAAGTATTATAGAAGTCCGCTTCATATTTAGAAGTATTAAGCGGTAAATGGGTTTGGAAGTGCTGGGTGGTTAATAAGGCTTCATTATTATTTTGTACCTTGTGAAGGGGTAAGTATGTTATCATGTGTGCAATGCAAGGCAAGATTAGAATTGCTAACCTTGATGGACATAACGATTAAATTGAAACCAATTGGTATAAATTTATGTTATGGATAGTTTATATTTTTCCTGTCATTGAAACGTTGTTCTGACCCCTCCCTTATTACAACCCGCATGATAGAATTTAGGGGAATAGGTCACTGGAGCTAGATGTTCTTTGTTGTTGGAGAAGTCTTCTTTCTCTTATTCTCGGTACTTATATGACAATCTGCTATCCAAGGAATACCACTAATTCCAAGGTAGTGGTTATAATCAGTATTCTTATCCTATTATTTTTTCCGCTATGAGTTTAGATTTCTATCAATCTTTGATAATGCCCATGCTTATTTCCAGATACCAAATCCAATGATCTGTGCTTTGATGGACTTGGGTTTCGATTTTTTTGGAAATTTAGGCCCATAGAGGTACGGGTTGTTACAATAGCATGATACGTAATTTATGATATGATAGTTATAAAAGAACATGGGATGGTATCAGTATATGATATGTTAAATTCCGATGGGACACGAGATGATTATGATTTATGATTAACACTTAAGCAAAGATTTGAGCCCTTAGCTATGATTGAAATTCGCTATGGATAGAGTAATACGAATTGTTCAACAAAATTAGAAATTGTATAAAGATGCTTAAATAAAAATGCTCGTAAGTGAAGTGCACTAGATATTTTTATACTAGTTTGGACTTTCCATCTTACATCCATTCTCAGATTCCTTATGGATTCAAACAATAACCCTTAATTAACCCGGAGTAATTGGTATCTTATAAAATCGCCTTAGCTGAAGAACAAGACTTTATGTCTGAAGATCTCCAACAGATCTTCAACTACAAAAGTTGACTTCGTGTGTTCTAAACAACACAAATGAGTCGATAGAGTACACCCTTCCTATAATCCTTTTCGTAAGTGGTATATCGTGTATATGTAGAAGAATGAAAGTAAATGGTCAACTAAATAATATTTCTTGAATGTTCAGATGATCAATATTGTAAATGAAAGCCTTTCAAAGCAAGAGCAGATTTCAAGAGATATGAGAGAAAAGCAATGGAAATTACATTTTTGATTCTTGAATCAAAGTGTTATACAAAACGATTAAAGAGTTGTATGCATTCATGAGAAGTAGATACTATTAGAGACAAGTACAACTCCTTAAGGAAGGAAATGTCATTTCGCTTAAGGAAGAAGACTCTTTGAAAATTTGAAAAAAATTTGGCAGTTATAAGTAACCAGTCGATTGATAGTGTACCAGCCAGTCGACTGGTTATAGTCGAAAAGGCAAGTTTCAAACCAAAAGAAAATAGTTCATTTTTGCCTATTTTTAGTCGACAGAAACCGTGGAACCAATCGACTGTTTGAGGCATCACTTGACTGTTTCCATGGTGTTAGTCGACTAGTTATGTCGTCTTATGAAAAATAAAATGCACAAGTATATTAGTCGACTAAACAAGTTTGACAAGTCGACTGATAATGTATTAGTCGACGGTTGAGTGGTTTTAGTCAACTGGTTTTGTGTATTTCTGTTTTTTAAATGGAAATGCAACTTGATGATTTTTGTGTATGTGTATACCAATTTGAAGAGATCTAATAATCATATGCTACTAGATACAAAACACTATGACTTTTGTAACTTTATTTGTCATCTCTAACTTGCCTTCGTCATTTTTGTCATTTTCGTCTTGTCTTCGTATATTGTCTCCACCATAGCCACTAAATCCTGTAATTTGTTAATAAAAGCACTAGTAGCATTGTCGTTGGGTTGTTATCATCAAAACACCAAAATAATGGTTTTTTACATTCTTCCCCATTTTGATGATGACAACCGCACAACCTACTAAAACATAAATAGCTCCCCTTAAACATATGCTATATTTTAATCTATATACATTACCAATGTAAGAACATGAGTTCTACAGGTTTTTCTCCCCCTTTTCCATCAATAAAAAGAGATAAAAACATAGGCATATATAGAGAAATGTGCAGCTTCCGTGTATATCATAAATTCCCTTAATATAATGTTTCCCTTTAAATTATAACTACATACCCCCTCTACTATATGCTCATTATTTCTCCCTATTTGTAATTAACAAAAATCACGTGAAATTTAAAAAATAGGAAATATCACAGATAAACCAATAAAAAATAGTTTTAACGTGCAGTGTAGATTATATATCAAAGCAACAAGTATCTAATATATTAATCTATTGCAGGCACAATAATACTCATATTTTAACAAATCCATGGTTCACATCTTTGGGAACCATATCCAAGTGAATGTGGTTGAGCTCTTGAAAATATAATTTTCATTTTTTTATAATCGAGTCAAAATAGTCACTAATATATAGTTGTTTATCATTTTTACTTGAATTAGCCGGAACCCATATTTTAAAATCACATGTCATTTAATTTATACTTAAAGAATGGTTTCCATTTATAAATAGAGTATTTCCATGACATACACTGGTTTTAGGACTATCTTGATGTTTAGTACTAGCATTAAAATGTGTATACATGAAAGCATATCTAGTACTATTCCTACATTTATCTTGTTTAAGCCTAAACCAGTTTTATCATTATGAATTTTGGTATCCATAATTAAGGAAGATAAGTCAATTTTTCCTTTATCAAAATTTTTGATTTTATTATTTAATCTATCAAAATCGGCTTTATAATCACAAATTTCTTTTTGCAAAATGATATTATTTTATTTTAAAAGTTCACATTCTTTAAATAGTTGAAGGTTCCTATCATTGAAAGCACTATTCTCTTTTTCAAAATACAAAAGTTTAGAATTAGATTTTTTTCTAAATAATTTTTCACAAATATATTTTTATTTGTCCATTCTCAATTTCCTTAAAAATATTTTTATTATTTAAACGCTCATTTTCTTTTAATGGAAAATCTTTTTGTAAAACAAATTCCTCAAATGTTTCTTCAAAGATTTTAGTTTGTTTTACTAGAAATTGTTTTGTTCCTTTAGAATATTATTTTTATGTTCACAATCATTTAATTTAGCTAATTAAATTTTATTAACCTTATTTATAGCTATAAAATATTCTAATAAATCCTCATGTTTTATTAAAAGGTCATTATGTTAAGAATCTAAGCATACCGATTAGCCATGAAGCATGCGCTTGAAGATTCTTTCGACTGTTTCTTGCTATAGCTAATCGCTTCTTCTTGATTTCATTTGAGCTCTGACTAGATCTTCTTTTGACCATTATTCTAAGATTGTGTTTTGATCTTCGGAATCTCAGGCTCTAATACTAAATGAAAGTCGCTACGGATCGAGTAATATGAATTGTTCGACTAAATTAAAAATTGTACAACAATTGCTTAAATAAAGTTACTCTGAAGTAAAGTGCACTAGAGAATTTTATAGTGGTTCGGACTTTTCGTTCTACGTTTAGTCCCAGACTCCTTCTAGATTTAAACAATAATCCTCACTTAACCCGGAGGAACATATATCTTATAAAACTACTGGAGCTGCCTATCAGGAATTCATGTCTAAAGATCTCCAATAGGTCTTCAACTACAAAAGTAGTTAAAAATTGAGTTCGTGTGCTCTAAATAACACGAATGAGTCGAAAGAGCACACCCTTTCTACAATCTTCTTCGTAAGTGGTATATCATGTATATATAGAAGAATGGAAGCAAATGATCACTTAAATAATATTACTTGAATAATATTTCTTAAATTTTCAGTTGATCAATATTGTAAACGGAACCCTTTGAATGCAAGAACAGATTTCAAGGGATTTTAAGAGAAAAGCAATGGAAATTACATTTTTGATTCTTGAATCAAAGTGTTATATATAATGATTGTAGAGTTATAGGTATTCATGAGAACTTGCTACTATCAAAGTGCAACTCTTTATGGAAGGAAATGTTGTTTCACTTGAGGAAGAAGGCTTGTAACAACCATTATTTTAGGGTGCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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Functional annotation

Database	accession number	e-value	annotation
nr	KAF2313434.1	6.3e-13	hypothetical protein GH714_010980
Swissprot	Q9SUP7.1	5.3e-09	WRKY transcription factor 53
trEMBL	A0A6A6MJI6	4.5e-13	High mobility group B protein 13

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G11080.1	56.25	1e-25	113	3xHMG-box1	HMG (high mobility group) box protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g401133	AT4G11080.1	112	49	0	181	292	331	442	56.25	1e-25	113
g401133	AT4G11080.1	75	44	1	218	292	242	314	38.67	2e-06	50.1
g401133	AT4G23800.2	119	45	2	184	302	343	450	52.94	8e-25	110

Ortholog group

Species	Genes
Allium cepa	g401133.t1
Allium fistulosum	AfisC7G02734
Allium sativum	Asa3G02698.1; Asa3G02701.1; Asa4G01855.1
Arabidopsis thaliana	AT4G11080.1; AT4G23800.1; AT4G23800.2
Oryza sativa	LOC_Os02g15810.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00505.16	HMG_box	Domain	222	290	70.0	1.5e-19

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09273	UBTF; upstream-binding transcription factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network