result

Gene information

Detail information of g403422

Location

Gene	Chr	Start	End	Strand
g403422	Scaffold_77169:HRSCAF_460255	39220	41708	-

Sequences

CDS

Protein

Gene

>g403422.t1
ATGTGGGAGTCTGATTCTTGTACTCACTTTGGTAAACAGCTGATCAAGAAGTTGAGTTTTCTTTCGATATTCAAGTCAGTTTGTGTAAGCTAAAATTTTCAAAGGACGCATGTAGATATATTTATCAGGTATATATGTTTTTTATATTATATATCCAGTAAAAATATAGCCAACAGTGACATGTTTAAAGTCCCAATGTAAACAAACCACGGAGCATTCATGACTGGTTTGTTCAACGAGTACGATGTTTCTGTCCAGCGAAGTGGTCTGGTTCACTTCTTAAAATGTTACAGAGTAGACTGTTTTAAGCTATTAAGCATCAAAATTGCATACAGTAGGCCACTTTAAGCTATTTAAGCATTGAAGCAGCATTAACTATGCTGTTTCAAGCTTTGGGCATTAGATAAAAGCATACTTCATGTTGTTTTAAACATACCATGTGGAAAAATGGCAGAAAATTAGCCGTTTTATTTCAGTTTAAACTTTCAATTGTATTAAATGGTTTGTTTTTTGTGTTTTGTTGTTATTCTAATGTTTTGTTCGAGTGATTTTTATGTTGCTCAGTGTGTAGTACTTATGTCAGCTTTTCATGGAAAATGGTGAAGTAAACAAAACAGTTGTTAAGGATAGGCTACAGGAAATCTTATCATATATACAAAGTTTTGAGAGAGAGGCATGATATCTCCGACTCATCTTGCACCCTTTTCTTCAACAATAGAAAATTATTGCTCAACCTCTATAGATTTTACTTAATGCAGTTATTGCAGGATGAGTTTGTTGCTGACAATGAATAAGGAAAATTAGCATATAATCACATTTACCAGTTTGAATACATTGACCAATGGTTGAGGCACAGAAGAGTTGGAGCCCTCAAAATATTAGCTATAGCTTGATCGTTTATTGCTCAAGAGAATAAAGAGTCAGGTTGTCTGTTCATTGAAGTCATTGAAACAGTTATATGAACTTTTACTAAGCTCTTTTTTTTCCAAAAAAAATTGTGCATAGAATTTTTGTCTTGTTAAAAACTCAAAAATGAGGATGGAACATGAACAAATGATTAAATCCACTTTTGTTCCTTTTATGATTTTAAATATTTTAATTGGGATGAAAGGTTTATTAACTTATTAACCAGCAGCGTTGTTTAGAAAGGTGCTAACGAAATTAGAGGTTACAGCTATGCCAATGTGTGCAAAACCCTCTGATCCTCTTTTTCCATGTATTTCAAGAAGAAAGGTACATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGCATATACAGATTTTTACCATACAAATTTACAAATTACATACATTGCACCAAAGGCATGCCACAATTATTGCATATTAGATAACAAACTTCAACAGAAAATGAAAGGGAATATCAGTACAAATGAGTACCATTGTTATGATATTCTTCTCTCTCTTCATCTCTTTCTCTCTTATTATCACAATTGTTACTAGTTCTATAAACCCATGAGTTCTATAGCTCCACCTTCATACTTTGTTTTTTATCGTTCTTTGTTTCACAATAATGCCTCGCTTTCCTAGGAAAATTTCAACTGACGTTGATAATGCAGATTTTGCAGACTCGATGCTGGAAGGATTTAGCAATGAAGAAGAAGCTGGAAAGAAATACAAGTCAAAGAATTTGGATGCAGAAAGGAGGAGAAGGTGCAAGCTTAATACTAAACTCCTCACTCTTAGAACTTTGGTTCCTAACATTACCAAGGTATATACAAAATTATCATTATTCGCTGCTAGTTCTTATATTTCAGTGCATGATATATGATGCATATAAACTCTGGCTGACTAATTATCAGATGAGCAAGGAATCTACACTTGTGGATGCAGTCGATTATATACAAAGTCTTAAGAAACAAATACATGAGCTAAAGCTTGAGCTTACGAGCATTCCTGAAACAAACAAGGATAAGCAAGTAAGCTCATCAAGTAGCGAAAGCATTGCTCCTGAGTTTTCGTTCCAAAGCCCGGTAATTTCGAAATCTTATTCACACTGTGACATTTTTAATGCATGAGATGAAATCATATAAGTTACTAAACATAAGTATTCTCTTGTATAAATGTCTTTAGGGAAATATTGATCTGTATCCTATGGGAAGAAACAAATTTCAAGTGAACATGACATGCAAAAAAATTGCTGGAAATTTTGCTAAATTGCTTGAAGCACTTGCTAGATATGAGCTTGCAATTACTGATATTAGTTTCTTTTCATTTAGTGGTTTCGATCATATCGTGTTCAGCGTTGAGGTATAAGTTTTACAGCCTGACATTGACATTCTCTTATGAATGTTATTAGCTAGCACAATTATTTTTCGATCCTCGACTTTTTTCCTTTTATTTTCTATTTTTTTTTTTTCAGGCAAAAGAAAGGAAGGAAGTTTCTGCTGCTGAGCTGAGGAAGATGCTTCTGGTAATTGTTGGAGGTTCTGAAGAAAACTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ATQ37970.1	2.3e-97	aborted microspores
Swissprot	B9FXT3.2	3.8e-28	Protein UNDEVELOPED TAPETUM 1
trEMBL	A0A2D2AKQ9	1.7e-97	Aborted microspores

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G12860.1	31.49	4e-16	81.6	ICE2;SCRM2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g403422	AT1G12860.1	181	111	3	51	218	265	445	31.49	4e-16	81.6
g403422	AT2G16910.1	203	102	3	51	217	312	506	28.08	7e-16	80.5
g403422	AT4G21330.1	170	104	3	41	200	20	188	32.35	9e-15	77.0

Ortholog group

Species	Genes
Allium cepa	g403422.t1
Allium fistulosum	AfisC7G03451
Allium sativum	Asa4G01072.1; Asa6G03153.1; Asa7G04494.1
Arabidopsis thaliana	AT4G21330.1
Oryza sativa	LOC_Os07g36460.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	53	98	45.5	4.8e-12

Gene Ontology

Accession	Ontology	Name
GO:0000003	P	reproduction
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003006	P	developmental process involved in reproduction
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009555	P	pollen development
GO:0009791	P	post-embryonic development
GO:0009908	P	flower development
GO:0022414	P	reproductive process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048229	P	gametophyte development
GO:0048367	P	shoot system development
GO:0048437	P	floral organ development
GO:0048438	P	floral whorl development
GO:0048443	P	stamen development
GO:0048466	P	androecium development
GO:0048608	P	reproductive structure development
GO:0048653	P	anther development
GO:0048658	P	anther wall tapetum development
GO:0048731	P	system development
GO:0048827	P	phyllome development
GO:0048856	P	anatomical structure development
GO:0061458	P	reproductive system development
GO:0090567	P	reproductive shoot system development
GO:0099402	P	plant organ development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network