result

Gene information

Detail information of g403486

Location

Gene	Chr	Start	End	Strand
g403486	Scaffold_77176:HRSCAF_460262	131549	133619	+

Sequences

CDS

Protein

Gene

>g403486.t1
ATGGATTCTTCTCAATGGGCTCAGGTTAGAGCTAGAAATTAATATTATGATTAATAATCTTTCCTTACTGATCTATGATTTAACTTAAATATTAAACTTTTCTTCTTCTCCTTCTTTTTTGAGATACATATGAACCTTTTGGCTAAATAAATTGACCTCTATCATTTTGCTTTTAGTCTTTTATCCATTTAAAGTGATAATCAAGTTCTTCACTTTATTTTACCTTTTCTTTTTTACTACTTTTCAGCTTTTTTGGATTAAAAGCAGTGCCACTATATGATATTATTTTGTTCAATAGAGGCACAAAGAAGCTTTTTCTTGTTTCTTATTATTGTTTTATTTATCTTTTTAACTTTTTAATATTATAATTAGTATTTTCAATAAAGATGCTAAGAGCACTGAGATAATTGCTGTGGTTGGCTATCTATATGTCTGTTTGTTGGTTAGTTCTTGCATGATTCCTATTTCATCTTTGATTTAAATGAAGAAAAAAAGAACCTCTTGCAAATTTCAGTTCTCTTCCTTCTATAAATATTTTCTGCAATTTTTTTTTGTTTAAATTCATAAATGAGCGCATATGTCTTACTAATAAGGTTTGTCTTCAGATCATATTTTAATCTCCGATTTATTTTTTAATTTTTTGACCACGCTTATGTTTTTTTATGAAAATTATTTGATTTGAACTTTATCATCCTGTATCTATTTTACAGTTAATTCCTATATTATATATATATATATATATATATATATATATATATATATATATATATATGTACACACACACACGTTTTCTTCTCTTCAAACCTTGATCATTTTTCTTTTGAGAGAAAAGTAGTTTGCTTAAATAAGATATTGATCCTATGAATTTTAATATCCTTTTCCATTCCATTATTTACAAACTACATTTTTTGGACAAGATAAGTACATCGTTTTTACATAAGATCATATGAATCCAGTTTCAAACTATTTAAATTGTTGACAAGAAAATCATGCTTTCATACGAAACCCAATATATTTTTTTTTCAAAACATTAGAAAGGAAAGAGTTGAATTAGCACTTGACAATTTCTTTAATAAAAGAAACTTCATTCTGCCCTAACTTCGCATATTTTTAATATTTAGCAACTAAGATTTCTACTTCTTATATATAGTTTTTTTTAAAATTTATTAATTATTCAGTTCTTGGATGACTTACAAATAGTATTGTAAAATATTAAGTTTTTTTATTTGATATATGCCCAACAAAAAATTTCCTATTCTAACTTAATGTTTTGTATTGATGATTTATAAACATTCATGTTATGTAATAACAATTCCTTAATTAGGTCTCCTCCACTACTAATAACTTCAACAATGGAACAAGACTACCACCACCACCACAACAATTAGTTGAAAAAAGAACCAGACCTGTAAAAGAACAAGCAGTCAACTGCCCAAGATGCAACTCAATAAACACAAAATTTTGCTACTACAACAACTACAGTCTCTCTCAACCAAGATACTTTTGCAAGACTTGTAGGCGATATTGGACAGAAGGTGGAACTCTGAGGAACGTTCCGGTTGGTGGAGGATCTAGAAAGAACAAAAAGCATTCTTCATCAAATAAAGCTGGTAATAATCAACCCACTAATCCAGTTATACCATCTAATTTGATTATGTCAAAGCCAAGTTATCAAGGACAAGATCTAAATCTAGGATTTGAAAACAACAACATGATGCTACCTCAACTGTTTGGTGCAAGCTTTAGTAATAATAATATTGAGAATAATAACAGTAGTGGTGGGCTTAGTGCTATGGAGTTGTTGAGGAGCACTACAAGTGCAATGTATGGCAGTGCTGCCATTCAAAATTATGGTGGTGCTAGTGACCATCATCATGTTAAGTTTCCATTGAATAGTGTTGGGGATCATGGCATGCATAATTTGTTCCCTTTTGGTGATATGAAGCAAGTGCATATGAAGTCGAGTAATGAGATTAATGAAGGGATAAATAAAGGGCAAGGAGGGGAGCAAGCAATTGTTTCATTTTGGAATGGTGTTGACAACGTGCAAGGTGGTGGTGAACCTTGGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_022763495.1	2.1e-33	dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q43385.2	2.8e-27	Transcription factor BBFa
trEMBL	D6MK29	3.9e-34	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24060.1	35.37	5e-33	137		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g403486	AT4G24060.1	294	112	9	31	246	42	335	35.37	5e-33	137
g403486	AT1G64620.1	97	30	2	1	90	1	97	61.86	3e-31	132
g403486	AT3G61850.4	282	98	14	29	252	63	321	36.52	8e-31	130

Ortholog group

Species	Genes
Allium cepa	g403486.t1
Allium fistulosum	AfisC3G06562
Allium sativum	Asa2G05501.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	40	96	116.0	5.4e-34

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009314	P	response to radiation
GO:0009409	P	response to cold
GO:0009415	P	response to water
GO:0009416	P	response to light stimulus
GO:0009628	P	response to abiotic stimulus
GO:0009639	P	response to red or far red light
GO:0009791	P	post-embryonic development
GO:0009845	P	seed germination
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010017	P	red or far-red light signaling pathway
GO:0010029	P	regulation of seed germination
GO:0010030	P	positive regulation of seed germination
GO:0010035	P	response to inorganic substance
GO:0010114	P	response to red light
GO:0010161	P	red light signaling pathway
GO:0010371	P	regulation of gibberellin biosynthetic process
GO:0010372	P	positive regulation of gibberellin biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010565	P	regulation of cellular ketone metabolic process
GO:0010817	P	regulation of hormone levels
GO:0046889	P	positive regulation of lipid biosynthetic process
GO:0046886	P	positive regulation of hormone biosynthetic process
GO:0019216	P	regulation of lipid metabolic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019747	P	regulation of isoprenoid metabolic process
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0032350	P	regulation of hormone metabolic process
GO:0032352	P	positive regulation of hormone metabolic process
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0042221	P	response to chemical
GO:0043455	P	regulation of secondary metabolic process
GO:0045828	P	positive regulation of isoprenoid metabolic process
GO:0045834	P	positive regulation of lipid metabolic process
GO:0046885	P	regulation of hormone biosynthetic process
GO:0046890	P	regulation of lipid biosynthetic process
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0048580	P	regulation of post-embryonic development
GO:0048582	P	positive regulation of post-embryonic development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051094	P	positive regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051240	P	positive regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0065008	P	regulation of biological quality
GO:0071214	P	cellular response to abiotic stimulus
GO:0071229	P	cellular response to acid chemical
GO:0071462	P	cellular response to water stimulus
GO:0071478	P	cellular response to radiation
GO:0071482	P	cellular response to light stimulus
GO:0071489	P	cellular response to red or far red light
GO:0071491	P	cellular response to red light
GO:0080090	P	regulation of primary metabolic process
GO:0090351	P	seedling development
GO:1900140	P	regulation of seedling development
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0062012
GO:0062013
GO:0104004
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network