result

Gene information

Detail information of g405601


Location
GeneChrStartEndStrand
g405601Scaffold_77432:HRSCAF_460518209419223721+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_009406569.12.0e-32PREDICTED: single myb histone 6-like isoform X1
SwissprotQ8VWK4.12.7e-26MYB transcription factor
trEMBLA0A8D7AHD34.9e-33(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT1G49950.139.912e-32 136ATTRB1;TRB1telomere repeat binding factor 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag405601.t1
Allium fistulosumAfisC3G04122
Allium sativumAsa2G03280.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain55531.81e-07
PF00538.16Linker_histoneDomain12718932.66.9e-08

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005515Fprotein binding
GO:0000228Cnuclear chromosome
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000723Ptelomere maintenance
GO:0000781Cchromosome, telomeric region
GO:0000784Cnuclear chromosome, telomeric region
GO:0000785Cchromatin
GO:0001101Presponse to acid chemical
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0003690Fdouble-stranded DNA binding
GO:0003691Fdouble-stranded telomeric DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0005730Cnucleolus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0006259PDNA metabolic process
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006950Presponse to stress
GO:0006970Presponse to osmotic stress
GO:0006996Porganelle organization
GO:0042162Ftelomeric DNA binding
GO:0046983Fprotein dimerization activity
GO:0008134Ftranscription factor binding
GO:0008150Pbiological_process
GO:0042802Fidentical protein binding
GO:0042493Presponse to drug
GO:0010038Presponse to metal ion
GO:0009628Presponse to abiotic stimulus
GO:0009651Presponse to salt stress
GO:0009719Presponse to endogenous stimulus
GO:0009723Presponse to ethylene
GO:0009725Presponse to hormone
GO:0009733Presponse to auxin
GO:0009737Presponse to abscisic acid
GO:0009739Presponse to gibberellin
GO:0009751Presponse to salicylic acid
GO:0009753Presponse to jasmonic acid
GO:0009889Pregulation of biosynthetic process
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010035Presponse to inorganic substance
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0014070Presponse to organic cyclic compound
GO:0016043Pcellular component organization
GO:0046677Presponse to antibiotic
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0046686Presponse to cadmium ion
GO:0031323Pregulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031627Ptelomeric loop formation
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0032200Ptelomere organization
GO:0033613Factivating transcription factor binding
GO:0033993Presponse to lipid
GO:0034641Pcellular nitrogen compound metabolic process
GO:0042221Presponse to chemical
GO:0042592Phomeostatic process
GO:0042803Fprotein homodimerization activity
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0043565Fsequence-specific DNA binding
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044454Cnuclear chromosome part
GO:0044464Ccell part
GO:0046483Pheterocycle metabolic process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060249Panatomical structure homeostasis
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0065008Pregulation of biological quality
GO:0070013Cintracellular organelle lumen
GO:0070491Frepressing transcription factor binding
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:0097305Presponse to alcohol
GO:0098687Cchromosomal region
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1901700Presponse to oxygen-containing compound
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1990841Fpromoter-specific chromatin binding
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09422MYBP; transcription factor MYB, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.