result

Gene information

Detail information of g406168

Location

Gene	Chr	Start	End	Strand
g406168	Scaffold_77493:HRSCAF_460579	280398	283265	-

Sequences

CDS

Protein

Gene

>g406168.t1
ATGCAAAGAAACGACGAAGAAGAGTCGACGAACAAGGAGGAATACAATGGAAAATGTAGCATTTGCTACAAGCCACCGGTCAACAGATAGAGTTTACTACTTGATTGAAACTCATTTCAATCAACTGGTAAACCTACCAATCGACGGGGTTATTGTCTAGTTTGGACTCGAGCACATTTCTGCCCTTGGAGTCGATTGAGATTTTTTTCCAGTCGATTGGATTTGTCAATTAGAAAATGTTACAATCAACTAACGACAGCAAATCCTTAAGAAATTTGAGGCTCAAATTTTGAAAGGCGTTTTCACCTACTTCACCAATGCTCGAGTTGCCACTGTAGAAAATGTTACCAATTTCTGAAATGCAGTTTCATTCTGATCCAATGACATAGTGTATCTGAAAAGTATTATAAATAGACCTAGGATTTATAGTTGTTCATAGGGTTTTTTGTAGTTTCTTCGTTCACGGGTTTAGCTGTCGAATTTAAAATCAATCCAGTAATCTCTTCTCTCCATTAAAGTAATAAAAAAAATTTATTGCAAAGTGAACGTACACTGCATTTACTGGAATACTATAAATCTAATATGTCATTCATTGTTCTTTGTAGCACCTATGATTTACGTTCGATTTTTTGAGATATTATTTATTTGTTTATTCCACTTTACCATCAACATGCTCTTATTGTTATTTCGTTGTGTTAGGGTTGATTTGATTATTGAAATGTTCCCCAACAACATCATTTTTTATTTGCAAAAGTGGATCACAGTTAGTTTTAATTTATTTATTTTTCTATTTTGTAAAATGAATAAACTTTCTACACTTTATTTTTAATACAAATAACCTTGTTTATATTTTTATAAAATAGAAACACAATAGGAAAAAAATAATAATGCATATATTGTTACTAGTATACTTACATGCGCCTATGTTGTATTTAGGAATCATGTTTGTCCATTATATTTCTTACTTTTTTTTAAACCTTCCATTCTATTTTCTCTCTCTTCACTTTCTCTCTTCGGAAAAATATTCAAGAGTATAAGTAGCACTCGATTTTGGGGCAATCAACACTTTTATTTGTTGGACAGAAGTTGAAATGAAAGTACCGTATCAAAACTCTTTCACTATACCAACATGTATGATGTTATTAGAACGATATTTATGAAACCAATTACAATTAAAATGCATTTACCGAGATCCCGTTATATATAATGGGAATGAAGAATTTATTAATTTGCTAACAGTAGAAGATGTCTTAATGAAAATATTCTGTTCAGTCAGTGTGTGTGTATATATAATGAATATCTGTTCATTGTGCATAATTAAGAAACGAATTAAGCATCCAGGTAAAAATGATCAGATAAACAAAAAAAGACATGCAAACATTAAGAATAAATCGGTGCGATTTCATGCTCTGCCACAAGGACCATATGTTTTCTAGTACTATAGAATATACAAGAAAAGTAACAAGTTGATTAAATGTTTAAAGACGGTTAAACTTAATCAGTGAAACATAATGTAAAGCAAACTGTTAGATATATTACCATTCAATGTCAGTAAGCTATATTTCGATATTCTATTGTATTCAATAAAATGTAACAAAATATTTGACCAGTAGGTCGCACCATCGCAGGTAACATGTGGCTTCAGGCACTCCGTAATAATTAATGCAGTGTATAAATTATAAAGTAGTTAAACTGAACCTTAACATGCCCCGTAAGCACTTAATCACCGACCAGTTACTTTGAAAATTAAATGACGTTTCATTCTTTATTTTTCAGCGTAGCAGAAACATGTCAAACCCTCCATGTAGATGGAAAAAAAAAGAGAGCTAATACCAGCGAGAAAGGTCCTAGAATAATTAAATCCATCAAATTATCCGTCTAAAGATGCAAGGGTCCAGGTGTTCGCTCTTCCTTCACTAGTTTAATCCAACCTGGAACTTGTGCTTTCCGCGCGGAGTGCCCACTTTCCTCTTTCCTAAGTCCCACCCCAAACCTATATAAGCCCCCCACCCCTCATCACTCACTCTTTAACCAATCCCATTCTCAGCCCTTCTTCTCTTTTCTTACCAAATTCGTACATCTTCCATGGACAGGTCAATAAACTCAAGGTCCAGCCACTCAGACTCCGACTCCTACGCCACTATCTCTTCCCAGCCCCCCAAACGCCGCGCGGGCCGGACCAAGTTCCGCGAGACCCGGCACCCGACCTACAAAGGCGTCCGCCGCCGCAACAACAACAGGTGGGTCTGCGAGGTCCGGGAGCCCAACAAGAAGTCCAGAATCTGGCTGGGCACCTTCCCCACCCCTGAAATGGCTGCCAGAGCCCACGACGTCGCTGCCCTTGCCCTCCGTGGCAGGGCCGCCTGCCTCAACTTCGCCGACTCCCCGCACGTGCTTCCTGTGGCTGAGAGCTCGAGTCCGGCTGACATTCAGAGAGCGGCTGCTGCTGCTGCTGAAATGTTTCGGCCCAGTAAAGAAGGGGTGGAGTGCGAAAGGAGTGAAGTGGAGGGGGCTGAATGCGAAAATGAGATGATGCAGTTTTTAAACGATGCCGAGGACGATGATTCGGGGTTGAGGATGGATACTTATTTTGATGACATGGCGCGAGGGATGCTGATGGATCCGCCACCGCAGTCGTTTGTGCCTGAGTACTACGAAGTTGAGAATGATGGCGAGATCTCGCTTTGGAGTTTCTCCATTTGATATGAGGGATTTGAAATTTTGGAACAACTGCAGTGCTCCGATGTGAATAAAACGCAGCTGTGCCATGAGATGATGGGTCTATATTTTTATTTTGGGAATTTAGGTTTTTTATTTTTCTTTTTTATTTGGGGATTTTTAGTTGATAGCGGGAGCAGGGGAGAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	ABF59740.1	9.5e-45	CBF-like transcription factor
Swissprot	Q9FJ93.1	2.2e-38	C-repeat/dehydration-responsive element-binding factor 4
trEMBL	A0A2S1VVP2	6.9e-45	Cbf-like transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G51990.1	53.72	3e-45	178	CBF4;DREB1D	C-repeat-binding factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g406168	AT5G51990.1	188	69	5	39	212	19	202	53.72	3e-45	178
g406168	AT4G25480.1	181	75	2	40	212	18	194	51.93	8e-42	167
g406168	AT4G25470.1	179	78	3	43	212	21	195	49.16	1e-41	167

Ortholog group

Species	Genes
Allium cepa	g406168.t1; g66628.t1; g66629.t1
Allium fistulosum	AfisC6G00132; AfisC8G02877; AfisC8G02878; AfisC8G02879
Allium sativum	Asa1G02377.1; Asa1G02394.1; Asa1G02396.1; Asa1G02398.1; Asa1G02399.1; Asa1G02401.1; Asa1G02402.1
Arabidopsis thaliana	AT4G25470.1; AT4G25480.1; AT4G25490.1; AT5G51990.1
Oryza sativa	LOC_Os02g45450.1; LOC_Os04g48350.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	72	121	51.5	8e-14

Gene Ontology

Accession	Ontology	Name
GO:0001101	P	response to acid chemical
GO:0006790	P	sulfur compound metabolic process
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006082	P	organic acid metabolic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0008150	P	biological_process
GO:0009266	P	response to temperature stimulus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009415	P	response to water
GO:0009628	P	response to abiotic stimulus
GO:0009631	P	cold acclimation
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0009987	P	cellular process
GO:0010035	P	response to inorganic substance
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0016143	P	S-glycoside metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0019748	P	secondary metabolic process
GO:0019757	P	glycosinolate metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0042221	P	response to chemical
GO:0043436	P	oxoacid metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0044237	P	cellular metabolic process
GO:0044281	P	small molecule metabolic process
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0080090	P	regulation of primary metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901135	P	carbohydrate derivative metabolic process
GO:1901363	F	heterocyclic compound binding
GO:1901564	P	organonitrogen compound metabolic process
GO:1901657	P	glycosyl compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network