result

Gene information

Detail information of g407659

Location

Gene	Chr	Start	End	Strand
g407659	CHR4	62629551	62638076	-

Sequences

CDS

Protein

Gene

>g407659.t1
ATGGGGAGCAGAAAAGGAAAGAGGAGTGCGGAGGAGGACGTTGAAGGATCCGCTAAGAAGAAACTAACCGCTAAGACCCGCGATCATGATTCCGGTAGTGGCGTCGTCGTCTGCGAGGTCTTTTCCACTCACATTTCCCCTTTAGATCTTGTTATCACGATATAATTTCTGTATGTTCCCTGTGATTTTCGCCTTGCTTGTTTATCGTTAATAGCTTAAGTTGCCAGTATTTGTGCACACATTAGGGTTTCTGTTAAACGTACTACAAAGTGAGTTCAGCTGTTTGAGTCACGGTGGATTTTTTATACGACTTAGGATGAAAAAACCACTTAAAATATTAGCGCGAGAACATCGTTCTTTTAGAGATTACTTGAGGGGTAATCTGCTAAATTAGCAGAATTGTATAACATGAGCTTTTTTTTGGAGCAATTCTAGAGCTGTATGAGTTTAAGGTGCCGTTTGCAGCAAAAAAATGGTCCGACTGAAGCGGGTCATTTTAGACCGTTTTGCTGGAAATTCCCCTTTTAACCATTTTAATATTGTTAAATAATAAGTTAATTAATAAATTTAATTTTTTATAAATTTCAAAAATTAATAACATGTGCAAATGATGTCCGTTTGAGACGCGGTTTCTTGCATTGCGATCGTATCAAACTGCTCTACATCATTTAAGTGCTTGAATTAAAAAATTTAAACTAAAATTCTGCAATTTATTTCGTGTCATAGGCAATTATTAAACATATTGCACAATTAAAAACAAATATTTAATTAACTATAACTCGATTAAATTAAAATTCCCAAATTAAAACATGTCACTCAAAGGTCCCATTTAAATATTCCGCCTGTAGCCGCAAACGTATATCCCGTTTAACTATCTACTTCGATTAAACACCCCTTCCGTTTACCGCAAACGCACCCTAAGTTTGGTTGAATTTGCGGAAGTGCATGTGAAATGTCTTTTATCTATCATCCTACATTGCGCCTTTTTGACTTTTAAACTTTGAAAAATGGCCTAAACTATCATTGAAGAGCGATGGATTGTCGCCAAATGATATATTTAAGTAATAAAATACGTTGGCAAGCATATTAATTAGGCTTGATAAACACCAGTCAAGTGTGTTATGTGTTAGCCATGTGTATGGTACATATGACCCATTTCCTTTTGATTTAAGGCAGTATTCCGCTGTAGACACCGATCCTTGTGATTTGTGGAACAATCATGTGACTGAAATATTTTCTGAGTATTAAATAACTTACTGAACATCTGAACCTCTTAATAAAATTTATGTTTATGAGGATGCCATCATTTGCCTCGCTTAGGCTTTGCCTAAGTTGTGTGTGGTAGTGTATACACTCCTACAGATGCAACTGATGTAGGACAGAGCCAGCTTTTATCCAATCCACCAGAGCCGAAGCTTTGGCAAGGCCGTTCTTTTGCCTGTACAGTACATGTTGTAAAATATTATAGATAAACATCATATTGTGAATTTATGATACTTGAAACAAAAGATGTTATTTACAATGTTAAATCAGTGCCTTTATATAGGCTACAAACATACTTTAGGTACAAGCAATAACTAATCATACCTACGATTAACCCACTTAACAACCACTTTTAGCATATTAATAGGACATACATTACACATAAATATAATTTTAACATCTTCCTTTGAATTGAATGTTTGTTTAATATTCATTTATAAAGACTTTTTATCTTGATTATCTCTTCGTTTTTAATAAACGATTTCAGTCATGATTTTGATCTTTTACCCGATTGAACATTCTCAACTGTTTCACTTAACAACCACTTTTAGCATATTAATAGGACATACATTACACATAAATATAATTTTAACATCTTCCTTTGAATTGAATGTTTGTTTAATATTCATTTATAAAGACTTTTTATCTTGATTATCTCTTCGTTTTTAATAAACGATTTCAGTCATGATTTTGATCTTTTACCCGATTGAACATTCTCAACTGTTTCACATTGATTGGTTCATAACTTGCAAAACATCAATAAACTCATGTGGTTCCATCCAGTGGACTCGATAAATCTCTGCCCAAAGATCATCTCCTGTTATTGTTATGTCTGTCAGCTCTTCATCAGCAAGTTAAAGTTGAGGCTTCTTCCATGACCGTCAATTGTGGGCTTCTGCTTTAGTGTTTCAAAATTTTTGTTGGCTGCAGCTTGTCTTGCTACAAATGCACTTAGTTTAGACTTTGCCTCTTCCTTTGCTCTCTTCTTCTCCATCTTCCTTCTCTGTATTACTTCTTGCTTGCATATTGTAGTTCTTTATTGGCCTCTTGTGCCAAATCAGCTCTGACTGTTTCAGCTTGGGAATATATTTAAGGTCTTAATTTGAAGCATCCAGTGAGACCAATATAATATCGAATACATGCAACAAGCCTGACCATTTCAGGCATTTCGTTTTCGTCTTTTGTGTCTCTCACTCAAAACCTGAACAAGCACAACCTTACTGGTAAATTACCCCAGCCTCCTTACTCTCATTAATAACTGCCAGCTCCTCTACAACTCTTGGATCCATCTCCTTTGAACATCGAAAACGTATCTCCATGCTGCATACATCCTGAACACTTTGCTAATGCATGGCTTACCCCATTCTTTGTCTCAACATCTGCTGCAGCACTTTTAATCACAGAAACAAGTTCCATTGTTGATCATACTCATTACCATCGCCAGTAGCACTAACAAGACCCGGCGAGCAGCAACCCCTTTACGGTGGCCACACTCCATTTCGATTTCAAATTTCTCTTTGATGCAACCAACAAGTTGATTTGAGATCTCGCTATCAATTTCTTGGATTTCTCAATAAAGTCCATTGATTAGGACAAAATTATATTCTTTTGGACCATATGTGCATCTTTGGATGCGTATGTTTCAAAAAAATTGTGAAAATATTTCTAACAAAAAGGACACTCATTGGCCACCCCTTCCGTATTCAAATTTGTTTGGTGCATATTAGATTCTGAAAATAGAACCTAGTTCAATCAAGCATTCTGGCTTTTGGATCGGCGTTTATGCCTTTCTTTTGTATGGCACGCCACACATGAAAAGCGCAGCGAATAGAGCAAATGGCGTGCGGCGATGAAATGACGCTCTTTTTAGTTTTATTGGTTTATACTTCTTTTTTATTTATTTTTAATTTTTCACAATTCAAGTTAATCTGCATCCATGGTTGAATGTATTATATTTTTTTTTATACAATGATACGATTACACATGCAACTAATCTCCAACAAACTTTGAATTATTTATTTATATTATTGTCGCATCGTACTAAGATGGACACGATCCAAACCAAATGAATAACGGGTCGGGTTTAGTAGATGAAAAATAACATGAAGAACCGATCAAACATGAAAGATTAGACAAAAAAGCGAGAAAGCACATACATTTTTAGAGTATTACACAATTGGATCCGATTTGAATCGAACCGCAGGCGATTTCAAGATTTTGAAATATACAAGTTAGACTCAACAAAACCCAACCGGATTAGAATTGGGACCCGTCCAGTTGGGTCCAGATCCGACCCGACGGGTCTAATTATCACCCTTACCCCGAACAAATAGTCTTTTTGCATTCTGGACTCAAACGAAATTTAAACTATCTGTTCTAATTACCGCTGCACAAAACAAATAGTCTCGAATGAATTTTTTTAAAATCTTCAACGAACTTCGAACTATCTGTTCTGATAACGTTCGCATTGAATAAATTGTCAATCTATATAAGACAGACGAAAAAGATGCTGAATCTTATGAATTTGATCATGCATGTATGGATTTAGAAAATATGATTGTTAAATCCAATTCCGATTTCTATTTTATCGTAATATGTATCAGCATGTCCTTTGATGGATAAAAGTTAATACATTAAACATAAGTAGGTCCTTGCTCGTTTAGCAATTATTTGTATGCTAGTTGCTTGATTGCAAAAAAGTTGAAATTCGCTAAAATAATTTAATATTCCTTTCAGTTTATTTTTTCTTAGGGAGTTGAAGAAGGATTTTCTTCTTTGTGAAAAATTACACATTTTTAGATATGGATGCTTCAGTATTTGGATAGTGCACATTCTTTAAGTGTGCATACAAGTTAAAGCCCATTTACATCTTTGCATCTAGCCCAGCATGAGAATGGGTCATTTCTGATATTTATTCCATGATTCAAAAGAGGCTAAAAAGTTGTGAATGATGAGCATTAAATGAAGTATGCGATTAATACAGTTTTATCGAAGTATGAAGACATTGCATGTTTTCTTAAGCGGTCATATCAAAAGTGTCTCCAGTGGGAACCACTTTTAAATATATTCCAAGAGTTTTTTTATCCAGCAAGTGTTGAAGATTTTGTGGATATTAAATGCAAAATAATCATTGAAAATTAGGGCTGTCAATGGGTCGGGTTTGGGTCGGGTCAAGTCGGGTTCAGGTTGATTTTAAATGGGTCGGGTCAACCCGTTAAAACGGGTCAGAAAAAGCTCAACCCGAACCCGACCCGTTTATAAACGGGTTGATCCGACCCGTGTAACCCGATTATAAACGGGTCGGATCGTAAATGGGTCGGATCAACCCATATAAGATGTAAACGGGTCGTAAACGGGTCGAGTCAACCCGTATAAGGTATAATCGGGTCGTAAACGGGTCGGGTCAACCCGTATAAGGTACAAAAGGGTCAAAAACGGGTCGGGTCAACCTATATAAGTATAAACTGGTTGTTAACGAGTCAATTTCGGGTTAATGGGTCAACCCGAAACCCACCCGTTTATAAACGGGTCAAATTCGGGTTGATCCGAAAATGACCCGTCAACTTAAACGGGTCGGGTTAACCTGCTAATTTCCGTGTGGGTTTCGGGTCGTGTAGAGAATTGACAGCCCTGATTAAAATATCACCTCGCTGAAAGCTTTAGTTAATCTTTTCTTTGAATTGTTGTAGCTGTCAAAGAACAGAAAGGTTTCAGTGCGTACTTGGCAAGGGAATGTCATGGTTGACATTAGAGAGTACTTTGAGAAAGATGGGAAGCAGCTTCCTGGCAGAAAAGGTATTCTTCTATGTTTTACTTGTACTAGTATGATATGGTATATAATCATATGCCCTAGTGTAAAACCACAAAACAGTGCTTGCTTACTCAATCACCGTCACAGATGTTCAGTTCCTTCCATTTGGATTGTTTGCTTGTATGAGAATATGGTAAATGTGGAATGATATCTCTATTTTCACCTGTGCAGTGTTCAAATTGATGCATCTAAAATATCTTATACAAAAAATTTCATGTGCAACTTAGCTGGTGAACCTGTTTCTAGCATAAAATATTGTGTTATTATGTTAAACCATCGACAAGTGCATCTATTATGTAAGCACAGACGTCCTGTACTTCTTTTGTTACTACATTGACGTCTAGTCATGTGAACTGAACCATTTTTTCCCTCTCTTTCTACATTGTTAGTCATTTGTATACAAATTACTAAATTTGTTCTGATAGATCTTATTATCTTACCATGATGCTTATTTTCTTGTAGGTATCTCACTGTCCGTGGATCAGGTACACTCTCTTAAGCCATAGCTTACTGCATATATTTTTACATTGGTAGTTTTAACTGTTATCTCTCTGCTTTGTGTTTCATATGCTGCATACAGAAATATGTGACATGCATCATAATTTTTTTCATATGATCATTACATAAATATGCATATCTCAGTTTAACGCAGTGGATCAGGCTGAGTGTCTGCCTAGTAATTTTTACAGCTAATTTCCTTCCATTTGTTAAACTGAGGAATTTGTTGAGTATGGACATCATATTTATCTGATACAAAAGCAGAAGCTGATTTTATGACATTTTGATTAGGTCATACTAATCCAGTTCTGCATCTTAAATCTCTACTAATTATAATGATCATTACTCCTTTCATCTGCGTGTTATTTTTTAGAATTCTGAAATTGTCCTTTCTTTTATTAAACCCTACCAGGGAAAGAAGTTATCAGTTGATATATAGGATGGGCCTAAGTAATCAAATAAGGAAATTGAGATTCAAAGCAAAAAATAAAACAATAAAATTTGAAATTTTGATCAATTTTAATTTGGGATTATTTAGAAGGCATACGGTGATTAAATTGGGAAGGGCAGACAAACTGCATTAGATGTGATTTAGCTATTCTATGGATTCGGAATACAATTTAATAAATTTCTATGGATTCGGAATACAATTTAATAAATAAAGTATTGAATTAAATTTCTATTTGTATTATTATATCTGGTATTATCCATAAAAGTATGCAATGTTAGAGAATTTCTATTGAATTATTACATTCACTATTTGTGCTATTATGTTATGGTATTGTCCATAAATATATACAGTTTTACAATTTTGAATTTCTATTAACTGTATTATATTTGCTTTTTCAACATTCTCCTCTTTTATTCATTTTTTTTCCTTTATATACCCCAATAAAACTAAATGTTAAGTTGGACTGTAAACAAAATAAAACAATGACCTACTAAATAATTCGGCAAATACAGATGAAAACTATAAATAAAAATACATTTGACTGCATCGGGTAAAAAATCCAGCGTTTAAAGCTCACTTAAAACTGTAGGAACAGTAAAAAGATTTAAGATACCGAGTGTCTAACCATTTTGAAAGACAACATAGGCATGCAAAGACACACATTTGTTTGAATACTTCATCTATATGGTATCTTAAAATAGAAGATATAAGCTGAACTTAACTATACAAGTTATTGAAACATGGTGTATTTAAATTGCAAATTATAAAGAACACAAAATAGTTTTAATTTGTTTGGCTGGAACATAAAGATCATTATTGTGAATTCTACTGTAATTATTTTCAAACAGAGACCAAAAACAATTTCCAAATTGAGAGGGTGGCGTTTTTGGTCAGGATGATGGAGTTAGGAGATGGCGAGCGAATACGTGCATACAGAGACATGATGGTAGCATGTTTTGCACAAATAATATGAGATAGAGGCATTGTGGAGAAATTATTGTAATACCCGTTAGTCATATATTTAAAAAAAATTTGGCACAGATTATTGTAATACCCATTAGATGAGAGCTAAAGCAACATTTAGGGGTATTAAAACAAATTTTGGCACAGATTATTGTAATACCCGTTAGTCATATATTTAAAAAAATTTGTTTACTCTTAAGTAGTAACTATCCTGTCAACCTTTCCATAGTCAAAGTGATATTTGTATATACCAATATCATTCAATTTACAGTTTTTAATTTATTTGTTGTTATAGTGGATGGTTTTCAAGTTTACTAGATCCATTAGCTTTTAAGTAGACTAAATAAATACACGTCAATGGAATTGTTAGGCGTTCCTTGATATTCAAGTAGCTGTCAATACATTTACATTTTTGAATTGAAAGTGTCAGCTTTCAGTCAAATATTAACACAACGAGAAAACTTTATATGCTTCGATGATAAAAGGAACCCCTATTATAAGATAATTTATATTTGTTTTATTTTAAAAAAAAAAGCGATGTTAGAATTTCACATAATATTCAAAAGTATTTTTCCTTCTTTGGTCTATAATTCGAATGAAAATGAGACTAAAATGAATTTCACTTTATATCTTGTGATTCATTTGTTATTTTATATTATGGCATTTACTGTCGTGTCACCTGAGACAAAGTTTTATTTTTAACTGTTATTATTGTTTGGAAATTACATCTGACGGGAGAATGATGTTCCTTCCAGTGACAGAATTACTGGTTGTATGAATTACTGGTTGCCTATCAACTTATCTAATATTTGTATAACTGGTAACCCTATTCCATGGGAATATGTAATAATTCTCCATTTAATGTAACATCTGCATGCTGTGAAAAATTAATAGAAGGAACAACTGCATGCATATTGAGCATGCAGTTTTGCTAGTCTATAGTAAGGTTAAAAGCTCTTGGAACTTGTATGACTAAAGAACTTATACGGTTTACTGTTATAGTCCCCCGAAATTTTTAGCTGGCCAAATTACCAATATTCTTTTTGTTATTTTTTCCAACCCTGTATATTAAACTTAGTTCAAAAAATGTTGGTGACCGTAAATTATAACAAATTTTACAAAAAATTATGCCATCGTGTCTCTGCGTAAGTTCAAAAAAGAAAGTGAACTTGGATTTATCATGAGTTTTACGTTTTTTCATTTCATTTTATTATCATTTAGTAAATTTAGTTAGTGTCAAGATTGCGTGTGGTAAACAAGAGATATAGAGAATATGTATGAATATGAACCATAGGTTTTTCACATTTAACCGGATTATTTGTTTTTCCAAAGGGAAGCTTCAATACTAGCAATTCATTTTGCAAGCATAGCAGTAATATGATACAAATAAACTATTTTGGGATTAAAAAAGCAAATTAAACAGAGTCATTTGCAAGCTTCATCATACAACTAATCTTTTTTTTTTCTCTCTGTTGTGTAGTGGAATATACTGAAGGAACATATTGATGACGTCAACAAAGCTCTGAATCAGAATGCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_019417754.1	1.8e-25	PREDICTED: RNA polymerase II transcriptional coactivator KIWI
Swissprot	O65154.1	1.8e-22	RNA polymerase II transcriptional coactivator KIWI
trEMBL	A0A1J7H3U3	1.3e-25	PC4 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G09250.1	50.96	1e-23	104	KIWI	ssDNA-binding transcriptional regulator

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g407659	AT5G09250.1	104	42	2	3	98	2	104	50.96	1e-23	104
g407659	AT5G09250.2	81	34	2	3	75	2	81	46.91	7e-14	72.0
g407659	AT5G09240.1	108	50	4	3	99	2	106	40.74	1e-13	71.2

Ortholog group

Species	Genes
Allium cepa	g355405.t1; g407659.t1; g407660.t1
Allium fistulosum	AfisC2G03645; AfisC4G05376; AfisC6G06591
Allium sativum	Asa0G00431.1; Asa5G04479.1; Asa6G01326.1; Asa6G03987.1
Arabidopsis thaliana	AT5G09240.1; AT5G09240.2; AT5G09250.1; AT5G09250.2
Oryza sativa	LOC_Os02g34840.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02229.13	PC4	Domain	38	89	89.2	8.4e-26

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003712	F	transcription cofactor activity
GO:0003713	F	transcription coactivator activity
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0009893	P	positive regulation of metabolic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010557	P	positive regulation of macromolecule biosynthetic process
GO:0010604	P	positive regulation of macromolecule metabolic process
GO:0010628	P	positive regulation of gene expression
GO:0045935	P	positive regulation of nucleobase-containing compound metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031325	P	positive regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031328	P	positive regulation of cellular biosynthetic process
GO:0031334	P	positive regulation of protein complex assembly
GO:0032991	C	macromolecular complex
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043254	P	regulation of protein complex assembly
GO:0044087	P	regulation of cellular component biogenesis
GO:0044089	P	positive regulation of cellular component biogenesis
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048518	P	positive regulation of biological process
GO:0048522	P	positive regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051128	P	regulation of cellular component organization
GO:0051130	P	positive regulation of cellular component organization
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051173	P	positive regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051254	P	positive regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0060260	P	regulation of transcription initiation from RNA polymerase II promoter
GO:0060261	P	positive regulation of transcription initiation from RNA polymerase II promoter
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1902680	P	positive regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000142	P	regulation of DNA-templated transcription, initiation
GO:2000144	P	positive regulation of DNA-templated transcription, initiation
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network