Detail information of g408440


Location
GeneChrStartEndStrand
g408440Scaffold_77764:HRSCAF_46085084762105751+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020241297.11.3e-250serine/threonine-protein kinase ATG1c-like isoform X1
SwissprotF4IRW0.11.2e-176Autophagy-related protein 1c
trEMBLA0A8B9B0201.7e-204serine/threonine-protein kinase ATG1c-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT2G37840.150.420.0 641Protein kinase superfamily protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag248779.t1; g408440.t1
Allium fistulosumAfisC1G00477; AfisC6G01185
Allium sativumAsa7G00778.1; Asa8G05209.1
Arabidopsis thalianaAT2G37840.1; AT2G37840.2; AT3G53930.1; AT3G53930.2
Oryza sativaLOC_Os03g16130.1; LOC_Os03g16130.2; LOC_Os03g16130.3; LOC_Os03g16130.4; LOC_Os03g16130.6

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00069.22PkinaseDomain89343247.41.4e-73

Gene Ontology
AccessionOntologyName
GO:0044409Pentry into host
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003824Fcatalytic activity
GO:0004672Fprotein kinase activity
GO:0004674Fprotein serine/threonine kinase activity
GO:0006464Pcellular protein modification process
GO:0006468Pprotein phosphorylation
GO:0006793Pphosphorus metabolic process
GO:0006796Pphosphate-containing compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0008219Pcell death
GO:0012501Pprogrammed cell death
GO:0048102Pautophagic cell death
GO:0008150Pbiological_process
GO:0009405Ppathogenesis
GO:0009847Pspore germination
GO:0009987Pcellular process
GO:0016301Fkinase activity
GO:0016310Pphosphorylation
GO:0016740Ftransferase activity
GO:0016772Ftransferase activity, transferring phosphorus-containing groups
GO:0016773Fphosphotransferase activity, alcohol group as acceptor
GO:0019538Pprotein metabolic process
GO:0044403Psymbiosis, encompassing mutualism through parasitism
GO:0032502Pdevelopmental process
GO:0036211Pprotein modification process
GO:0043170Pmacromolecule metabolic process
GO:0043412Pmacromolecule modification
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044267Pcellular protein metabolic process
GO:0044419Pinterspecies interaction between organisms
GO:0051701Pinteraction with host
GO:0051704Pmulti-organism process
GO:0051828Pentry into other organism involved in symbiotic interaction
GO:0071704Porganic substance metabolic process
GO:1901564Porganonitrogen compound metabolic process
GO:0140096

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K08269ULK2, ATG1; serine/threonine-protein kinase ULK2EC:2.7.11.1 mTOR signaling pathwayko04150
Autophagy - animalko04140
Autophagy - yeastko04138
Autophagy - otherko04136
Mitophagy - yeastko04139
Longevity regulating pathway - wormko04212

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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