result

Gene information

Detail information of g408919

Location

Gene	Chr	Start	End	Strand
g408919	Scaffold_77808:HRSCAF_460894	327636	328999	-

Sequences

CDS

Protein

Gene

>g408919.t1
ATGAGAGCAAAAGAGTTGAATCGGCTGTTTCCGATTGTTGATTCTGAAGCAGCGCCTACTGCTAATCCGAGATCTCATTTTAATCTTTTATGGAAACAGCTCCATCATCTTGGGTAATTTTTTTTGAAACTCTCACCCAGTTTTAATTTAGTACATTTCTTTAGATTTATATATAGGAAGCTGAGTACATGGACTGTTATTATTTTAGAATCATTTACTGGAAAACTTTGTGTTCGTTCATACATTTTTTTACAGTTTGATTAAAGCATCTATGATGCCATGTCACCATTTGCATCACCAATTTATTGTGATATAATAGATCCAATTGCTTGATCATCACGATCCAAATTTTGGACTTGATTTTGTTTTTTCATTCAGGTGCATGTTGTTCATTTGTTTTCTCTGTGCTCCTCTAAAAAGAAGATATTCTTCTTTAATTTCATTTGATTGAAGGATCTAATTCTCCTTTTACATATACCTAAACTATGCTCTTGAAATTATTCCATGTTAATTAAAAATGTAGTATGTTTCCAAGTCTGATCAAACGAAATTCATTCCTAAAAGTGAAAGGAATTGATGACGCATTCATCTACGAGTTTGTGAGCTAAAGGGATTTATCTGAGCTTTGAAACAATGCACGACTACTGTAGAATAACACTCTCAAGATATAATATTAGGTCCCATTACATTTACACATTACTGGACAAATTGATGGTATATTCACATATATTTTTCCTGTTCAAGTGGAAAAATGCAAACAGATATCCTGATCAAAATAAAATGATATTACAGATAAGACGTTCATCATACCATGATGTAATTCGAGTATCAGAGATCCAGAAATATTTATACATAACTGGAGTTCAGACTTACATCATAAACAGTGCTAGAATCGTGTTTCTGAACGAGCGGCCTTGGCCTAGGCCTGGCAAAGGCGTCACCAACACATGTGAAGTCTGTGAGCGCAGCCTTCTTGATTCATTCCGCTTCTGTTCACATGGATGCAAGGTATAAAGCAATCTTGATCCTATGCACACACACACTTATACATAAAAATACATTGTATATATGATTGATTGTTTGCAAGATGTTACATTGTAGATTGTTGGTACATCAGAAGGTTTCAATAAATATGCAAACAAGATGAAGGTGAAGATGAAGGCAATGGCATTGGATTCGGAAGAAGAAGAATCACACTCTAGCACCAGTCATGGAAGTGCAAGGTATAGTTCTTACTATATTTCTACACGTTTACCAATTTAAAAAAAAGAGAAAAAAGAAAGAAAAAAAAAATCCATATCATATCTGTAATATACAGGGAAGTTCCGGAACCTGAAGCTACATTGCGTGTTGCATATATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	AJV90886.1	5.2e-20	PLATZ1
trEMBL	A0A0D4WUM0	3.8e-20	PLATZ1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G17900.2	58.75	7e-19	89.4		PLATZ transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g408919	AT4G17900.2	80	23	2	39	117	58	128	58.75	7e-19	89.4
g408919	AT4G17900.1	52	10	1	39	89	119	170	78.85	2e-18	87.8
g408919	AT1G32700.2	47	10	0	39	85	58	104	78.72	2e-17	84.3

Ortholog group

Species	Genes
Allium cepa	g234581.t1; g24498.t1; g408919.t1; g510081.t1
Allium fistulosum
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os02g46110.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF04640.11	PLATZ	Family	38	80	36.9	3.9e-09

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network