result

Gene information

Detail information of g411532


Location
GeneChrStartEndStrand
g411532CHR4197661750197664832-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrAEX92969.15.4e-76MADS box protein 5, partial
SwissprotQ5K4R0.31.6e-56OsMADS47
trEMBLH2BL613.9e-76MADS box protein 5 (Fragment)

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G22540.156.785e-65 244AGL22;FAQ1;SVPK-box region and MADS-box transcription factor family protein

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Ortholog group
SpeciesGenes
Allium cepag411532.t1
Allium fistulosumAfisC4G02946
Allium sativumAsa0G05496.1
Arabidopsis thalianaAT2G22540.1; AT2G22540.2; AT4G24540.1
Oryza sativaLOC_Os02g52340.1; LOC_Os03g08754.1; LOC_Os03g08754.2; LOC_Os06g11330.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00319.15SRF-TFDomain398685.79.4e-25
PF01486.14K-boxFamily12020055.93.3e-15

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000900Ftranslation repressor activity, nucleic acid binding
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006417Pregulation of translation
GO:0007275Pmulticellular organism development
GO:0008150Pbiological_process
GO:0009266Presponse to temperature stimulus
GO:0009628Presponse to abiotic stimulus
GO:0009791Ppost-embryonic development
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009908Pflower development
GO:0009909Pregulation of flower development
GO:0009910Pnegative regulation of flower development
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010608Pposttranscriptional regulation of gene expression
GO:0010629Pnegative regulation of gene expression
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0017148Pnegative regulation of translation
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022414Preproductive process
GO:0030154Pcell differentiation
GO:0030371Ftranslation repressor activity
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0032268Pregulation of cellular protein metabolic process
GO:0032269Pnegative regulation of cellular protein metabolic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0034248Pregulation of cellular amide metabolic process
GO:0034249Pnegative regulation of cellular amide metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0045182Ftranslation regulator activity
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0048367Pshoot system development
GO:0048438Pfloral whorl development
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0048580Pregulation of post-embryonic development
GO:0048581Pnegative regulation of post-embryonic development
GO:0048608Preproductive structure development
GO:0048731Psystem development
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051093Pnegative regulation of developmental process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051241Pnegative regulation of multicellular organismal process
GO:0051246Pregulation of protein metabolic process
GO:0051248Pnegative regulation of protein metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0060255Pregulation of macromolecule metabolic process
GO:0061458Preproductive system development
GO:0065007Pbiological regulation
GO:0080090Pregulation of primary metabolic process
GO:0090079Ftranslation regulator activity, nucleic acid binding
GO:0090567Preproductive shoot system development
GO:0097159Forganic cyclic compound binding
GO:1901363Fheterocyclic compound binding
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2000242Pnegative regulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0140110

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09260MEF2A; MADS-box transcription enhancer factor 2AEC:- MAPK signaling pathway - flyko04013
Apelin signaling pathwayko04371
cGMP-PKG signaling pathwayko04022
Parathyroid hormone synthesis, secretion and actionko04928

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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