result

Gene information

Detail information of g412680

Location

Gene	Chr	Start	End	Strand
g412680	Scaffold_78260:HRSCAF_461346	44434	47075	-

Sequences

CDS

>g412680.t1
ATGGAAGGGACTTCAAGGTTTAGAGCGCAAAACGAACCAAGTAAACATATCAGTACCGACCTCTTTTTAGGTAAACAACTCCAAGGAAGCTCTAAAGGAAAAGGACAACTATTGAAGATGTCAGAACCTCCATGCAATGACTTGATTTCTAAGGAAAGAGTGTTTGGAGCTTTATGGAACGAGGATGGAAGACCAAGTGCTAAGCTTATCACATTTCGATCGGACCTACCATACTCATCAGAAGAGATTATAAAAAAGCTCGACCTACTCGATGAAGAGGACATCTTAGGCTCTGGAGGATTTGGTACTGTCTACAAGATGGTGATGGATGACTCTAATGCTTTTGCTGTTAAAAGAATTATTTATAACCGTGCAAATCAAGATCAAGATTTAGAGAAAGAGCTTGAGGCATTGGGGAGCATCAAGCATATAAATTTAGTAAACCTCAGAGGTTACTGCAGGCTTCCTACTGCTAAGCTTCTCATATATGACTACCTTGATTTAGGCAGCTTGAATTCTTATCTTCATGAAAGCGATGAAGGAGAACAACCTTTGAATTGGAATGCAAGAATGAAAATTGCACTAGGGTCTGCAAGAGGATTGGCGTACTTACATCATGACTGTTCACCATCTATAGTGCATAGGGACATCAAATCAAGCAACATACTTCTTGATAGGAGTTTAGAGCCTCACGTCTCAGATTTTGGCCTTGCCAAACTTCTTGTTGATGATGATGCTCATGTCACCACTGTAGTTGCCGGTTCCTTTGGCTATCTTGCACCAGAGTACTTGCAAAGTGGACATGCAACTGAAAAGTGCGACGTTTACAGTTTTGGCGTGCTATTGCTAGAATTAGTATCTGGAAGGAGGCCTATGGATGCATGCTTTCTCAAGAAAGGCTTGAATATTGTAGGATGGATGAACACAATGAGTGGAAAGTACAAATTAGAAGAAATAGTAGATGACAAATGTGGAAATGTAGATGTAGAAGCAGTGGAGGCGATTCTTGACATAGCCGCAATGTGCACTGATGCAGAACCGAGCGACCGCCCCAGTATGAGTAGAGTGCTGCAAATGTTAGAGGAGGAGGTCATGTCTCCATGTTCTTCTCACTTCTATGAGTCTCATTTTGACATCTAA

Protein

Gene

>g412680.t1
ATGGAAGGGACTTCAAGGTTTAGAGCGCAAAACGAACCAAGTAAACATATCAGTACCGACCTCTTTTTAGGTCAGTACTGACCTCTTTTTAGGTCGATACCAAGCTCTTTTTGAGCACTTTATAGAGCTTTGGTTTATATATTTCTAGTTTTGAGTGATCATCCTGGGCCCATTTCTGAAGTAATAGGTAAACAACTCCAAGGAAGCTCTAAAGGAAAAGGACAACTATTGAAGATGTCAGAACCTCCATGCAATGACTTGATTTCTAAGGAAAGAGTGTTTGGAGCTTTATGGAACGAGGATGGAAGACCAAGTGGAGTAAATTGGCACAATCTGCCATCATAATCAAGTTAGTACTGATCACTTTTGATTGGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTGCATATACTTGCTTAGGTGCTAAGCTTATCACATTTCGATCGGACCTACCATACTCATCAGAAGAGATTATAAAAAAGCTCGACCTACTCGATGAAGAGGACATCTTAGGCTCTGGAGGATTTGGTACTGTCTACAAGATGGTGATGGATGACTCTAATGCTTTTGCTGTTAAAAGAATTATTTATAACCGTGCAAATCAAGATCAAGATTTAGAGAAAGAGCTTGAGGCATTGGGGAGCATCAAGCATATAAATTTAGTAAACCTCAGAGGTTACTGCAGGCTTCCTACTGCTAAGCTTCTCATATATGACTACCTTGATTTAGGCAGCTTGAATTCTTATCTTCATGGTACGCACCATTGTACATGTAAGATACTATTTATTCGAATGTCCGGATAAATTCAACACCATTTAATTTTTTGTTATGATAATAGAAAGCGATGAAGGAGAACAACCTTTGAATTGGAATGCAAGAATGAAAATTGCACTAGGGTCTGCAAGAGGATTGGCGTACTTACATCATGACTGTTCACCATCTATAGTGCATAGGGACATCAAATCAAGCAACATACTTCTTGATAGGAGTTTAGAGCCTCACGTCTCAGATTTTGGCCTTGCCAAACTTCTTGTTGATGATGATGCTCATGTCACCACTGTAGTTGCCGGTTCCTTTGGCTATCTTGCACCAGGTATTCACATTTTCTCTGTGTACACACACACACACACATAAGTAATAATCAATTTTATGGCATGTGGCAATCTAACTGCTCTTTCATTAACAGAGTACTTGCAAAGTGGACATGCAACTGAAAAGTGCGACGTTTACAGTTTTGGCGTGCTATTGCTAGAATTAGTATCTGGAAGGAGGCCTATGGATGCATGCTTTCTCAAGAAAGGCTTGAATATTGTAGGATGGGTAAGCTACCTTATCTCCGTAACTGTACCATTAACTGTGTCAATTTAGCTGAGTAGGGATGACTAGCAGAAAAATCAAAATTTTAATATATTTTTCTGTACATTTACAAAATGACTGCATGCAGATGAACACAATGAGTGGAAAGTACAAATTAGAAGAAATAGTAGATGACAAATGTGGAAATGTAGATGTAGAAGCAGTGGAGGCGATTCTTGACATAGCCGCAATGTGCACTGATGCAGAACCGAGCGACCGCCCCAGTATGAGTAGAGTGCTGCAAATGTTAGAGGAGGAGGTCATGTCTCCATGTTCTTCTCACTTCTATGAGTCTCATTTTGACATCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020257108.1	5.4e-147	LOW QUALITY PROTEIN: LRR receptor-like serine/threonine-protein kinase FEI 1
Swissprot	C0LGF4.1	9.6e-109	LRR receptor-like serine/threonine-protein kinase FEI 1
trEMBL	A0A8B7D1Q7	1.6e-145	LRR receptor-like serine/threonine-protein kinase FEI 1 isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G62710.1	68.89	1e-127	452		Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g412680	AT5G62710.1	315	96	1	66	378	288	602	68.89	1e-127	452
g412680	AT1G31420.2	312	122	2	67	378	283	591	59.94	7e-110	394
g412680	AT2G35620.2	312	120	2	67	378	281	589	60.58	2e-109	392

Ortholog group

Species	Genes
Allium cepa	g412680.t1
Allium fistulosum	AfisC3G00885; AfisC4G06582
Allium sativum	Asa2G00765.1; Asa2G02716.1
Arabidopsis thaliana	AT5G62710.1
Oryza sativa	LOC_Os12g44090.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	92	358	157.9	2.8e-46

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network