result

Gene information

Detail information of g41435

Location

Gene	Chr	Start	End	Strand
g41435	CHR6	163984749	163986298	-

Sequences

CDS

Protein

Gene

>g41435.t1
ATGGGCTATTCCATTCTTAACTCTCTACAAAGTCAAAGAAAGTAACTATTTTTTTTATACTTAGAGATATTAAAATCAGCATATCATATCCAATGGAGAAACAAAACCCAAGTTCAATTCCAAGTATTGTGAGGCATAACAATCACAATGGAGTCGTAAAACTACCCCCTGGTTTCAGATTTCATCCAACGGATGAAGAGCTTGTGCTTCAGTATCTGAGAAGAAAACTGTTTTCCTATCCATTGCCTGCTTCCATCATTCCTGAAATCGACCTCGCCCGACATAATCCTTGGGATCTTCCAGGTAAGATTAATATATTTTCTTTTCTTTTTTAAAAATTCAAAATGAATTATAAAAGCAACTTAGATAGCTTTAAGCAAACTCTAAGCAACTGTTAGTTTCAAACACATTTTAGAAAAAAGTAACTTAAAAGAATCAAAAGCTGGGCAAATTATGCAACAAAGTTGCTAAACATGGGGATAAAATGTCAGGTGGATGCGAACAAGAGAGGTACTTCTTTGCACTACGAGAAGCGAAGTATGCAAATGGCAATCGTACTAATCGTGCTACTGAGTGTGGATACTGGAAGGCTACGGGAAAAGATAGGGTAGTCGTAGCGACTAAGTGTGGAAGAGCGGTCGGGTTGAAAAAAACATTGGTGTTTTATCATGGAAAAGCTCCGATAGGGCAGAAAACTGATTGGATAATGCATGAGTATCGACTAAACATTTCGAACCCTCGATCATGCGGTTTATCCCATATGAAAAACTCAACTCTAGTAAGTCTTTTTTTTTCTTCTTCTTGAATTTGGGTATAGTACATGCTTAAAGTATACCAGGACCATTAGTACACAACTAAAGGGTCTTAACAGTATTATCAGCGGCCATTAAAAACTTGGCTCTAGTAAGTTTACCTTTTTTCAATCCTTTTTCTTTCTTCACTTTCTTCTTTTTTCTGAATTTGAATTTCAATTTGGGTATAACATATGCTTAAGGAAGTAACCCAATACTTCTGTTACGCAACCAAAGTGTCTTGCCACTATTACCAATGGTATTATCAGCGGCCATTAAAAACTTGGCTCTAGTAAGTTTACCTTTTTTCAATCCTTTTTCTTTCTTCACTTTTTTTTTTCTTTCTGAATTTGAATTTCAATTTGGGTATAACATATGCTTAAGGAAGTAACCCAATACTTCTGTTACGCAACCAAAGTGTCTTGCCACTATTACCAATGGTTATAGGCAGACAAAACCAAAATTGGATGCATGATAATCTTGTACATGCACTTTGGGATGTCGACTAACAATATTTTCATAAAGCAGAGTGATGCGATTGAGGTAAAGGATTGGGTACTATGCCGCATTTTCAAGAAGAAAAGAAGCGCAAAGGCAAGTGTCGAACAAGAAGAGCATCGTTTCATCGATTTCATGGGCCGAGGAATGAATGGAAGACGCTCTTCCTTGCCCGCTCATTCGGATTCAAGTTGTGTCACGGATCACGCAAGTGATGAATCAAAGTATGGAGAGGAAATTACTTCATCATCATATCCGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010907664.1	9.9e-76	NAC domain-containing protein 83
Swissprot	Q9FY93.1	5.9e-57	Protein VND-INTERACTING 2
trEMBL	A0A6I9QF73	7.1e-76	NAC domain-containing protein 83

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G13180.1	63.91	6e-58	220	ANAC083;NAC083;VNI2	NAC domain containing protein 83

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g41435	AT5G13180.1	169	48	1	37	205	9	164	63.91	6e-58	220
g41435	AT2G33480.2	171	57	2	38	208	11	165	57.31	3e-53	204
g41435	AT2G33480.1	171	58	2	38	208	11	167	57.89	7e-53	204

Ortholog group

Species	Genes
Allium cepa	g41435.t1; g440985.t1
Allium fistulosum	AfisC2G01886; AfisC2G08475; AfisC6G02507
Allium sativum	Asa5G01615.1; Asa6G00927.1; Asa8G04229.1
Arabidopsis thaliana	AT2G33480.1; AT2G33480.2; AT5G13180.1
Oryza sativa	LOC_Os12g29330.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	43	166	93.4	1.1e-26

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network