result

Gene information

Detail information of g414464

Location

Gene	Chr	Start	End	Strand
g414464	Scaffold_78440:HRSCAF_461526	165866	171618	+

Sequences

CDS

Protein

Gene

>g414464.t1
ATGGTTGGTACAATCAAAATTTCATCTTTTGGCTCACCTGAAACATATGTCATCTTCTTTCTTGCAATTATATTCATTCCAGCTCCTTGCACTTGTAGCATTCAAAGCTTCAAGATTTCACCAGGGTTTCAAGGTGCACAGATGAATTTCATCGACAACAATGGCCTTTTTCTCCTGTCCAATGATTCAAATTTTGCATTTGGGTTCATCAACACCAATCTGAAAGACACCACTAATTATGTTCTTGCTATTGTTCATCAAAGCAGTAATTCTGTAGTCTGGACTGCCAACAATGAAAAACCTGTCACTCATTCCGACAATTTTGTGTTTGCCAAGGATGGAAATGCTTATTTGCAATCAGGAACTCGAACCATTTGGTCTACAAACACTTCCAGCAAAGGAGTTCTGTACATGGAACTGCTGAATTCAGGTAACTTAGTTTTGCTTAGCAGTGATGATTCTAGCTCTATTCCTGCATGGCAGAGTTTTACTTATCCTACCGACACCATTTTATCGGGTCAGAACTTTGTAGAAGGCATGAAGCTTATAAGCAGACCAAACAGCAACAGTAATCTAAGTTTCAGTCTGGAGTTTCGATCAGGCAATTTGTTCCTTTCCGCAGGGTTTAAAACCCCACAACCTTACTGGTCTATGAAGCAAGATAACAGAAGAATCGTCAACAAATATGGTGAAAATATATCTTCCGCGACTCTCAATGATAGCACGTGGAATTTATATGATAAAAAGGGTAACCTTTTATGGCAGTTCATTGTTGCAAGCAACAATGCAAACGATAGCAATATCATCTGGGTTATCATATTGGGTGATGATGGTATTTTACATTTTTATGGGTTGCAAAACGGAGCCTCGAAACTGACATCCCAAATAAATATACCAGAAGATTCCTGCGATGCTCCGGAAGCTTGTGGGCCATACTTCATTTGTAACAGTGGCAGAATATGTTCATGCCCGGGAGTGCTTAGTGGAACCACCGGGTGCAACCCGGGCATATCTTCATGTACTTCTAATGATGGGTATGAACTTGCAAACGTTGGTGATGGAATTGGATATTTTGCTACTCGGTACTCTTCTCCATTTGCAAAGTCGAATCTTACTGGATGTAAATCCGCCTGCGTTGACAACTGTTCATGTGTGGCTATGTTTTTCGATGAAAAGTCGAATAACTGCTTCTTGTTCGATCAAATTGGGAGCTTGCAACAGTTAGATGGGAACTCAAATTACAGCTCTTTTATTAAAGTTTCAAGTAATGGAAGACAGGCTCAAAACAGTAGTGCTGGAAGCAAACAACTTACACTTGCTTTGGCTATCTGTTTCTGCGCTTTGGCTGTAATATGCGGTCTTGTATACATGTCTATTAGACTGGGGCGGCGCCACAAAAGACTGTTAGAGCCTGTTCAGTCACAGAATGATTCTAACTCAGAGGAGGATAATTTCTTGGACAGTATATCAGGTGTGCCAGTGAGATTCAGCTATAAAGAACTTCAAGAGGCTACTGATGATTTCAGCATCAGGTTAGGGCAGGGAGGATTTGGATCGGTGTATCTTGGAAAGCTGAAGAATGGTTATGAAATCGCAGTTAAAAAGTTGGAAGGGATTGGGCAAGGAAAGAAGGAATTTCGCGCTGAAGTGACTACCATTGGAAGCATCCATCACATACATCTTGTGAAGCTCAGAGGCTTCTGTGCAGAAGGCACACACAGGCTTCTTGCATACGAGTACATGGCGAATGGGTCTTTGGAGAGATGGATCTTCAGCAAAAGTGATGAAGAAAAATCAAAACTGGATTGGGATACAAGGTACAGTTGATGAGCCATTTGGTAATCGATAGCAAAAATGATTATTTACAATTATTTTTTTGGTAAATCCATTTGCATATTGCAGATGCATTGGAATTTCGTAATTTGTTCCAACAACTAATTACATTATGAAAAGTAAATAAGTAGTATTAAATTATATGAAATAGGAAAGGCTAGGTGCTAAAATGTTGAAATACCGCTACCTTGCTAGAATTTTTTTCCCCCCGCCGATTTTAATCGTTTATGGATTACTTGGGTAAAAAAAAGGTAATGAAAACCAGCTTTTACGAGTTTTTTGAACCATCCATTATGTTTTAAAAATCAGTCAAAATGGGTACACTATATAACTTTAGTTGTTACTCTCAACCAAGGTTCAAGATCTCGATTTCGGTATTTTGTAATCATAAGAATTTTGATCTAATTTATAAATTTCGAGAATTTCGGTATCAGTTCCGATTTCGGATTTATTATTTATTTTTTCATGTAGTTACATACATATACATATACATATACACACACACACACACACACACATATATATATACATATATATGTGTGTGTGTGTGTTTAATTCATTGAACTAAAATGTATAAGTGATCTGTAATTGAAAATTTAGATATAAATGAGCAATACTGAAAATATTGAGTAATTATAAATACTTATAACACTAAAAAATGTTCATTCATTACTTCGTTTTCAAATTTTTTTAGTTACATCGTTTATATATTTCGTGGTTTTGTATGTTTATTAAGTTAAAAATTCATATTTTAAATATTCATATATTTAAAACTCAAATTAATTCTTTTTTCATGTTTCTTTTGTATAATTTGAAGTTCAATAGCTTTTTAATTGAAACGGAGTTTCAGTTTTATTTCGAACCGTTTTCCATCGAAACCGAAACGTCATGACTGGAATCTCGATGTTTCGGTCGAAAACTCAAACGTTGCTCTCAACCCATCGATTCAGTAGTTTATTATTTTATTTTTCCATTTTGCATATTTTCTTTTAAGTCTATCCTTTTTAGAACAATTGTTTAGAAATTTTCAGTTCTACTATATATCTTTAATTTTATTTTTAAATATTTTTATTTCTGTACATTTAATTTCTTTTTTCAAAATAATATTTAAATCCTATTGAAACATTTTGTATCTTTAATATTTCTTTTTTTTAATCAAAATTTTACTTTATTCAAAATTGATTTTTTCTTCTTCCATAGTATATCCTATTATGGAAGTATGATGCAAATTTTAAAATCAAAAATTTCAGTTTTGGAGGATCGGGTTCTTTCAAGAAATTTACTATAAGATGTGTTGCCTATTTAGATATATGTGTAACTTTACTTTTAGAATGGTTTCATAATAAAATTTAATTTCAAAGAACGATTTTAAACACCGTTAGAGTCAGATAGCTTTAAGTAGGGCCAAAGTTTTTGATAGGCCAAAATATAATTTAGGTAGGTCTTGTGTAGATGGAGAATATCATTTTCTTTAGTAAGGAAGGATCTAGTTTAGATTGGACAAATATTTTTTTCTTTAGTAAGAAAGTACATAAGATGTGCATTCCTACATTTCAGTTTTTGGATCACGAAATGCAATGGTCCAAATCATATTAAAGTATATGTGTTATATTTTAAGTTCATAAAATAAAATAAAGAATATGTTGATTTTGACAATTGAATTTTGTAACTAAAGATCATTCAAAATTTTGACAATTGAATTTTGTAACTAAAGATCATTTTGAACGAATCCTCTCTACGGGATCAGTGGCCTACTTGGATCAACATTTTGTTTTTTCTTTTAGTAATTAACAATAGTATATGACCAGCGATAGCTGAAATTGGATATCAAGTTACTAAACCCCAAGTGATCAACGATGTACTTTCCATTTTCTATGTAGTGTATATCGTATATACCTATTAGACAAAAGTGTTGGAAGATGGGTTTTGGTGACCATCTTTGATAAAAATAATGGATGTTCTCTTTTTCCCGTGACAATGAATTGAATCAAAAATCTTTCACGATATAATGAGTTTCTTTAATTCAAGTTTTTAACTACTTGAATCAAATTCTAGAACACTTAATTGTTTCTATCAATGCCAGTTGAGGAAGTACATAGTCAAGTATATTGTTAAGGACACCTCATTTTCCTTTTCCTAACACCATTGTTAAAAAATGTCATAAAATTTTACAATATATTCTTTTTAGAGGGAATTAGGCTGAAGGAAAAACCTGAGAACACTTTTAGTCTGAAGGACAGAAGTTTTAAAATTTAGCCTGAAGGACAAAAAATGATATATTCACATAGCATTACACATCCATAATGCTATATTCATATAACATTACACATCTATAATGCTATATACAACACAATTTTATAAGTTTCTGTATACACAAACAAGCGGCTGTGTAATGCTATATGAATATAGCATTATGGATGTGCAATGCTATATGAATATATCATTTTTTTGTCCTTCAGACTAAATTTTAAAACTTTCTGTCCTTCAGACTAAAAGTGTTCTCAGGTTTTTCCTTCAGCCTAATTCCCTGTTCTTTTTAATACTAGACATTTTAAAAAGCTACCAATGTATCATTTTCGATTTTTTTTTTCACGTCGTTCGACTGTCGATCAACATCATTTTACATGGCGATCAACCACCGACAACAATAGTTCAGTGGTTGATGGCCGTGAAAAACGGTATTGCTCGGCGAACATTCGCCGTGCAAAACGACTTTACGTAGTGGCTGGTTGCCGTGTGAAATAAATGCTAATAGAAAGCACACAAATTTTATTGTATTTATTATTTTTCTCTATGGTATTAGGATATTAGGAAGAGGTAAATTGGTGCCCTTAGCAACACGCGATTAAGTGTATTTTGTGCTACAATGATTATTGTATGTATAAAGATGAAAAGAAATGTCCAATTGGATTGATGAATGTTGGAGTAACGAGCGGAATCTAAAGGGATAATGCTATCGGTATAATTGTATAAACAATCTGAAAGGTCATATCCATCATGGGGGGATTGTCGGATAGCAAAAATTTATAAGAAGCTTCCAACAAAAATGCCCTCTTAGCTCTTTCTACAGCTGATAATCAGTAGCTCACTCGATCTTTATGGGTTTATTTGGTACTGAGCATATGCAAGTACGAATCTTTATGGGCTTTATGAAATATGAGAGCTGTTGTCTCTATAAATATCTTCCATCACTTATCGTGTTGCCAATCAAACTAGCTGTCACGTTTTCTGACAGGTACAACATAGCCTTAGGCACAGCGAAAGGCTTAGCCTACCTACACGAAGACTGCGACGTAAAGATCGTGCACTGCGACATAAAGCCTGAAAACGTCCTCCTGGATGAGAACTTCACAGCCAAAGTGTCGGATTTCGGTCTGGCCAAACTGATGACCCGGGAGCAGAGCCACGTGTTCACGACCATGCGGGGCACCCGAGGCTATCTGGCCCCGGAGTGGATCACCAACTACGCCATCTCCGAGCGCAGCGACGTGTACAGCTTCGGCATGGTCCTGCTCGAGATCATCGCAGGCCGCAAGAACTTCGACCCGTCCGAAACCTCCGAGAAGGCCCACTTCCCATCTTATGCGTTCAAGATGATGGAGGAAGGGAGGCTGAGGGAGGCGTACGATAAGAGACTGACGTACAACGAGAAGGATGAGAGGATGGAGGTATGTGTGAAGGTGGCATTGTGGTGCATACAGGAGGATCTGGGGATTCGGCCGTCTATGGCGAAGGTGGTGCAGATGATGGAAGGGGTTTCGTATGTGGCGCAGCCGCCGAGTTCGCCCCAGTTGGGGTTTAGGATGTATGCCAATTTGTTTAAGGCGATTAGTGAGGAGGAAGGCGGGTCGTCTTCAGGGCCTTCTGATTGTAACAGTGATGCGTTTTTGTCCGCAGTAAGGCTGTCCGGACCGAGGTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020251325.1	0.0e+00	LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
Swissprot	Q8RWZ5.1	6.7e-248	S-domain-2 (SD2) receptor kinase 5
trEMBL	A0A6V7QJE2	4.3e-300	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G32300.1	53.73	0.0	899	SD2-5	S-domain-2 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g414464	AT4G32300.1	832	358	17	15	833	4	821	53.73	0.0	899
g414464	AT5G35370.1	875	481	24	25	833	18	872	35.20	1e-128	457
g414464	AT1G34300.1	774	393	31	60	786	44	765	36.43	1e-110	398

Ortholog group

Species	Genes
Allium cepa	g414464.t1
Allium fistulosum	AfisC6G00781
Allium sativum	Asa8G05601.1
Arabidopsis thaliana	AT4G32300.1
Oryza sativa	LOC_Os06g29810.1; LOC_Os06g29810.2; LOC_Os06g29810.3

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF01453.21	B_lectin	Domain	91	177	78.2	3.8e-22
PF00069.22	Pkinase	Domain	511	775	169.1	1e-49

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019899	F	enzyme binding
GO:0019538	P	protein metabolic process
GO:0031625	F	ubiquitin protein ligase binding
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044389	F	ubiquitin-like protein ligase binding
GO:0044464	C	cell part
GO:0046777	P	protein autophosphorylation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network