Detail information of g414766


Location
GeneChrStartEndStrand
g414766Scaffold_78491:HRSCAF_4615779483199568+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020273407.10.0e+00SNF2 domain-containing protein CLASSY 1-like
SwissprotQ9M297.12.1e-216Protein CHROMATIN REMODELING 38
trEMBLA0A5P1E9R70.0e+00Helicase ATP-binding domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G42670.144.780.0 677CHR38;CLSY;CLSY1chromatin remodeling 38

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag414766.t1
Allium fistulosumAfisC2G06600
Allium sativumAsa6G04004.1
Arabidopsis thalianaAT3G42670.1; AT5G20420.1
Oryza sativaLOC_Os07g49210.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00176.20SNF2_NFamily69392056.02.3e-15
PF00271.28Helicase_CFamily1071119049.15.5e-13

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0000018Pregulation of DNA recombination
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000280Pnuclear division
GO:0008152Pmetabolic process
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0042623FATPase activity, coupled
GO:0003824Fcatalytic activity
GO:0017111Fnucleoside-triphosphatase activity
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005694Cchromosome
GO:0005730Cnucleolus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006139Pnucleobase-containing compound metabolic process
GO:0016887FATPase activity
GO:0006259PDNA metabolic process
GO:0006310PDNA recombination
GO:0006311Pmeiotic gene conversion
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006342Pchromatin silencing
GO:0006355Pregulation of transcription, DNA-templated
GO:0006725Pcellular aromatic compound metabolic process
GO:0006807Pnitrogen compound metabolic process
GO:0006996Porganelle organization
GO:0007049Pcell cycle
GO:0007127Pmeiosis I
GO:0007131Preciprocal meiotic recombination
GO:0008094FDNA-dependent ATPase activity
GO:0008150Pbiological_process
GO:0009889Pregulation of biosynthetic process
GO:0009890Pnegative regulation of biosynthetic process
GO:0009892Pnegative regulation of metabolic process
GO:0009987Pcellular process
GO:0010468Pregulation of gene expression
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010558Pnegative regulation of macromolecule biosynthetic process
GO:0010605Pnegative regulation of macromolecule metabolic process
GO:0010629Pnegative regulation of gene expression
GO:0015616FDNA translocase activity
GO:0016043Pcellular component organization
GO:0016458Pgene silencing
GO:0016462Fpyrophosphatase activity
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0016787Fhydrolase activity
GO:0016817Fhydrolase activity, acting on acid anhydrides
GO:0016818Fhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0022402Pcell cycle process
GO:0022414Preproductive process
GO:0030491Pheteroduplex formation
GO:0030702Pchromatin silencing at centromere
GO:0031047Pgene silencing by RNA
GO:0031323Pregulation of cellular metabolic process
GO:0031324Pnegative regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031327Pnegative regulation of cellular biosynthetic process
GO:0031974Cmembrane-enclosed lumen
GO:0031981Cnuclear lumen
GO:0033170Fprotein-DNA loading ATPase activity
GO:0034641Pcellular nitrogen compound metabolic process
GO:0035822Pgene conversion
GO:0035825Preciprocal DNA recombination
GO:0035861Csite of double-strand break
GO:0040029Pregulation of gene expression, epigenetic
GO:0043170Pmacromolecule metabolic process
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043228Cnon-membrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043232Cintracellular non-membrane-bounded organelle
GO:0043233Corganelle lumen
GO:0044237Pcellular metabolic process
GO:0044238Pprimary metabolic process
GO:0044260Pcellular macromolecule metabolic process
GO:0044422Corganelle part
GO:0044424Cintracellular part
GO:0044427Cchromosomal part
GO:0044428Cnuclear part
GO:0044446Cintracellular organelle part
GO:0044464Ccell part
GO:0045814Pnegative regulation of gene expression, epigenetic
GO:0045934Pnegative regulation of nucleobase-containing compound metabolic process
GO:0046483Pheterocycle metabolic process
GO:0048285Porganelle fission
GO:0048519Pnegative regulation of biological process
GO:0048523Pnegative regulation of cellular process
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051052Pregulation of DNA metabolic process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051172Pnegative regulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0051253Pnegative regulation of RNA metabolic process
GO:0051321Pmeiotic cell cycle
GO:0060255Pregulation of macromolecule metabolic process
GO:0065007Pbiological regulation
GO:0070013Cintracellular organelle lumen
GO:0071704Porganic substance metabolic process
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0090304Pnucleic acid metabolic process
GO:0097159Forganic cyclic compound binding
GO:1901360Porganic cyclic compound metabolic process
GO:1901363Fheterocyclic compound binding
GO:1902679Pnegative regulation of RNA biosynthetic process
GO:1903046Pmeiotic cell cycle process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903507Pnegative regulation of nucleic acid-templated transcription
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000113Pnegative regulation of cellular macromolecule biosynthetic process
GO:2001141Pregulation of RNA biosynthetic process
GO:0061806
GO:0061982
GO:0090734
GO:0140013
GO:0140097

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K10875RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like proteinEC:3.6.4.- Homologous recombinationko03440

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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