Gene | Chr | Start | End | Strand |
---|---|---|---|---|
g414766 | Scaffold_78491:HRSCAF_461577 | 94831 | 99568 | + |
CDS |
Protein |
Gene |
Database | accession number | e-value | annotation |
---|---|---|---|
nr | XP_020273407.1 | 0.0e+00 | SNF2 domain-containing protein CLASSY 1-like |
Swissprot | Q9M297.1 | 2.1e-216 | Protein CHROMATIN REMODELING 38 |
trEMBL | A0A5P1E9R7 | 0.0e+00 | Helicase ATP-binding domain-containing protein |
TAIR id | % identity | e-value | bit score | gene aliases | Short description |
---|---|---|---|---|---|
AT3G42670.1 | 44.78 | 0.0 | 677 | CHR38;CLSY;CLSY1 | chromatin remodeling 38 |
Species | Genes |
---|---|
Allium cepa | g414766.t1 |
Allium fistulosum | AfisC2G06600 |
Allium sativum | Asa6G04004.1 |
Arabidopsis thaliana | AT3G42670.1; AT5G20420.1 |
Oryza sativa | LOC_Os07g49210.1 |
Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
---|---|---|---|---|---|---|
PF00176.20 | SNF2_N | Family | 693 | 920 | 56.0 | 2.3e-15 |
PF00271.28 | Helicase_C | Family | 1071 | 1190 | 49.1 | 5.5e-13 |
Accession | Ontology | Name |
---|---|---|
GO:0000003 | P | reproduction |
GO:0000018 | P | regulation of DNA recombination |
GO:0051276 | P | chromosome organization |
GO:0005622 | C | intracellular |
GO:0005575 | C | cellular_component |
GO:0000280 | P | nuclear division |
GO:0008152 | P | metabolic process |
GO:0003674 | F | molecular_function |
GO:0003676 | F | nucleic acid binding |
GO:0003677 | F | DNA binding |
GO:0042623 | F | ATPase activity, coupled |
GO:0003824 | F | catalytic activity |
GO:0017111 | F | nucleoside-triphosphatase activity |
GO:0005488 | F | binding |
GO:0005623 | C | cell |
GO:0005634 | C | nucleus |
GO:0005694 | C | chromosome |
GO:0005730 | C | nucleolus |
GO:0043231 | C | intracellular membrane-bounded organelle |
GO:0006139 | P | nucleobase-containing compound metabolic process |
GO:0016887 | F | ATPase activity |
GO:0006259 | P | DNA metabolic process |
GO:0006310 | P | DNA recombination |
GO:0006311 | P | meiotic gene conversion |
GO:0006325 | P | chromatin organization |
GO:0006338 | P | chromatin remodeling |
GO:0006342 | P | chromatin silencing |
GO:0006355 | P | regulation of transcription, DNA-templated |
GO:0006725 | P | cellular aromatic compound metabolic process |
GO:0006807 | P | nitrogen compound metabolic process |
GO:0006996 | P | organelle organization |
GO:0007049 | P | cell cycle |
GO:0007127 | P | meiosis I |
GO:0007131 | P | reciprocal meiotic recombination |
GO:0008094 | F | DNA-dependent ATPase activity |
GO:0008150 | P | biological_process |
GO:0009889 | P | regulation of biosynthetic process |
GO:0009890 | P | negative regulation of biosynthetic process |
GO:0009892 | P | negative regulation of metabolic process |
GO:0009987 | P | cellular process |
GO:0010468 | P | regulation of gene expression |
GO:0010556 | P | regulation of macromolecule biosynthetic process |
GO:0010558 | P | negative regulation of macromolecule biosynthetic process |
GO:0010605 | P | negative regulation of macromolecule metabolic process |
GO:0010629 | P | negative regulation of gene expression |
GO:0015616 | F | DNA translocase activity |
GO:0016043 | P | cellular component organization |
GO:0016458 | P | gene silencing |
GO:0016462 | F | pyrophosphatase activity |
GO:0045892 | P | negative regulation of transcription, DNA-templated |
GO:0016787 | F | hydrolase activity |
GO:0016817 | F | hydrolase activity, acting on acid anhydrides |
GO:0016818 | F | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
GO:0019219 | P | regulation of nucleobase-containing compound metabolic process |
GO:0019222 | P | regulation of metabolic process |
GO:0022402 | P | cell cycle process |
GO:0022414 | P | reproductive process |
GO:0030491 | P | heteroduplex formation |
GO:0030702 | P | chromatin silencing at centromere |
GO:0031047 | P | gene silencing by RNA |
GO:0031323 | P | regulation of cellular metabolic process |
GO:0031324 | P | negative regulation of cellular metabolic process |
GO:0031326 | P | regulation of cellular biosynthetic process |
GO:0031327 | P | negative regulation of cellular biosynthetic process |
GO:0031974 | C | membrane-enclosed lumen |
GO:0031981 | C | nuclear lumen |
GO:0033170 | F | protein-DNA loading ATPase activity |
GO:0034641 | P | cellular nitrogen compound metabolic process |
GO:0035822 | P | gene conversion |
GO:0035825 | P | reciprocal DNA recombination |
GO:0035861 | C | site of double-strand break |
GO:0040029 | P | regulation of gene expression, epigenetic |
GO:0043170 | P | macromolecule metabolic process |
GO:0043226 | C | organelle |
GO:0043227 | C | membrane-bounded organelle |
GO:0043228 | C | non-membrane-bounded organelle |
GO:0043229 | C | intracellular organelle |
GO:0043232 | C | intracellular non-membrane-bounded organelle |
GO:0043233 | C | organelle lumen |
GO:0044237 | P | cellular metabolic process |
GO:0044238 | P | primary metabolic process |
GO:0044260 | P | cellular macromolecule metabolic process |
GO:0044422 | C | organelle part |
GO:0044424 | C | intracellular part |
GO:0044427 | C | chromosomal part |
GO:0044428 | C | nuclear part |
GO:0044446 | C | intracellular organelle part |
GO:0044464 | C | cell part |
GO:0045814 | P | negative regulation of gene expression, epigenetic |
GO:0045934 | P | negative regulation of nucleobase-containing compound metabolic process |
GO:0046483 | P | heterocycle metabolic process |
GO:0048285 | P | organelle fission |
GO:0048519 | P | negative regulation of biological process |
GO:0048523 | P | negative regulation of cellular process |
GO:0050789 | P | regulation of biological process |
GO:0050794 | P | regulation of cellular process |
GO:0051052 | P | regulation of DNA metabolic process |
GO:0051171 | P | regulation of nitrogen compound metabolic process |
GO:0051172 | P | negative regulation of nitrogen compound metabolic process |
GO:0051252 | P | regulation of RNA metabolic process |
GO:0051253 | P | negative regulation of RNA metabolic process |
GO:0051321 | P | meiotic cell cycle |
GO:0060255 | P | regulation of macromolecule metabolic process |
GO:0065007 | P | biological regulation |
GO:0070013 | C | intracellular organelle lumen |
GO:0071704 | P | organic substance metabolic process |
GO:0071840 | P | cellular component organization or biogenesis |
GO:0080090 | P | regulation of primary metabolic process |
GO:0090304 | P | nucleic acid metabolic process |
GO:0097159 | F | organic cyclic compound binding |
GO:1901360 | P | organic cyclic compound metabolic process |
GO:1901363 | F | heterocyclic compound binding |
GO:1902679 | P | negative regulation of RNA biosynthetic process |
GO:1903046 | P | meiotic cell cycle process |
GO:1903506 | P | regulation of nucleic acid-templated transcription |
GO:1903507 | P | negative regulation of nucleic acid-templated transcription |
GO:2000112 | P | regulation of cellular macromolecule biosynthetic process |
GO:2000113 | P | negative regulation of cellular macromolecule biosynthetic process |
GO:2001141 | P | regulation of RNA biosynthetic process |
GO:0061806 | ||
GO:0061982 | ||
GO:0090734 | ||
GO:0140013 | ||
GO:0140097 |
KO | Name | Enzyme ID | Pathway | Pathway ID |
---|---|---|---|---|
K10875 | RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein | EC:3.6.4.- | Homologous recombination | ko03440 |