result

Gene information

Detail information of g415497

Location

Gene	Chr	Start	End	Strand
g415497	Scaffold_78567:HRSCAF_461653	367777	375853	-

Sequences

CDS

Protein

Gene

>g415497.t1
ATGGGAAGATTCAACATCTTCAGAAATCTAGACCAAAAGAGTGACAAGAATATTCTTGTGTATAAATCCATCTTACACCATCGAATACATTCCTCTAGCGAGTCATACGAGGAAAGAGACAAAAGGCGGGAAAGAGAAGAGAAACGAGAAAAAGAAGAGAGAAAGAGAGAGAATAGAGAGAAGGAAGAATTCCAGTATGAGATGGAGCATCGTGGTCGCAAGAGAGATGACCAGGAGCGCCATTATTCTTCGAAAGGCTTCGGCTACCATCACTCTAAGTATCAACCGCACTTCAAGCATTCCAAGAGCTCCTGCTATCACAGGTGCTATTGTTCGTCAAGACGAACTTCGTCGCCTCCTCCAACTTCTCGAGCTCTAGCCGTGAGCTCTATCCCCACGTCCACCATGCTTGTCCCTATTTCTCGGGACAAAAATACTCTTGCTGTTAAGAATTTCGAGTCATCTCAATGACATATTATGTTACACATCCTTAGAGGCCTAGTGAGGAGAAACTTATTGCTAAAACTTCGACTCCTATAGCACCTTCCCTGCATTCCAACTCAACTATCCAAACATGGATCTTACTAGAACCTATGTTGAATGTAACTTGGACAATGTTCCCCTTAAGGATATCGAGAAAGGCTATGACGTCTATAATGTCATAGTCGAACGCTATAACTCTTATAGGGGATTGGCTAAAATTTAGCCTATATCAAAAAAAGAACTGCCTGCTCTTTTAGGCGGTAGAAAAAGATGCAATGGACGAAAATGAATTAGAATCAATTTGGCCAATTAATTAGATCAAGGTGAAAAAGAAGATAAGGCCAAAGAAGATGCCCTCCGTAAAGAAAGAGAAGAAAACAAGGATAAAATATTGTTGTGCTTAAAGGACAGGTGGAGCGGGCCCATGATAGAAATAGGGAGCAAGCCTAAGAGGTTGAGAAACTCAAGGCTAATGTCAAGGCCACCCGATTATTGCGTACAACCGCCAACATAGAGATATCCAAGCTTAAACCCATGTTGAGATACTAGAGGAAAAAGCTAAAGAAATTGATGAGTTGAAGGCCAAAATTAAAGCTCTCCAGAAAAAGGTTGTTGAGAAAAAGAGGCCAACACAGAAGATAGACCAATCTATCTTCAAATTCCATGTCAATAACTTCAAATCTACAATGACCTTTTACGTATCGGTGAATTGTATAATATTATTTTTAAATTCATGTTAGGTCATATGTTACTATAATTAGGGAGATGTGAGTAGTGACACTTCCGACATTTAGAAGTTTTATCGGACGATTTTGATCCTGAAACTTGTAAGGCCTATAAATTTTGATATGAGCCGAGCCAATGGTTGAGACTACTTTCAGTGAAAAGATATAATGGTTTCTCTCTCCATAATGTGGTCATAATAACTATTTGAACTTACGTTTGAGAGATATGGTTGTTTGAAGTTGGATCGCTTTTGATCAGATTAGTGGGTTAGATTTTCTCCTTTGAAAAAGAAGAAGAAATAAATTAGGAAATTGTGTTTCGGAAATTACAACGACAACTTTTTTGGTTTATTTATGGTTGTGCCCTAGATTCTCTTTTCGTTTTATTTTACCCCCTTATCCGATTTCAACAAGTTTTTTATGTTTTTCATATGTAAACCACGTTACGAGCTCTATGGAATTACACATTCTAATAATTAATCTTTAAAAATTCACTTCGCAAGTCATTAGCTTAAACAAGATTAACTATAATTGATTAGTTAATTAAACTGTTTAATTATCCCCTATGTTTTAGAATTCCAGGTTATTATATTTCTCTTCTACAAAGAACACAAGCTATGCATGTTAACACACGTGCACATTACAAAACACTGCTTGATCGACTGTTCTGAGCTAGGTTTGGCTGGAGTTTGAGTTCAGGTCATAACAGTTTCACTGTTGTATAACATAATTGTTTTTTGAATGAACGGAAGCGTCCATCTAGAAGGTTAGAACCATTGAAACAACCCATTTGAAATGCTTAAAATCCATTAATATTATTATGAATGGTTGCAACTTTTGGTTCAAATTAGAAGTTAAAGATCACGTCTTTTGACGAGTAAACGCATCTATTCATTATCTATAAACACACCTCTCTCTTAATCCGAGAACAATCAAATTTTTTCTTAAAGCTTTCTTCTATTTCTTCCTGATTTCATTGCTATTAAGTAATAACAAAAATACCATCTAGTTTGATATATTGCAAGTCGACACTTTTATTACTCCGAAAGATAACTCAAATTGACTTCGCTAGCAACATGCCATTGGAGAAAATGAATCCTCAAACTTAATATGCCTTGAAAGACAATGTGTCATACTTTGAATATATGGCAGCGATGGAAAAAAATAGAACCACGCGATTAAACGTGTATTGAAGCACGACTACCGCCATTGTCTCATATTGTCGAAGATTCGCTAATTTCAATGCTGCTTTTATTAATAGTTGTTTATTTATTTAGTTTTTCCTTTTGTTATGCTTCAAAGAAAGTTAGAAAATAGCATTAAAAACTATAGTTTTTAATTTCTTTTGAATGAGCACAGCATAAATCCTTAAAGGGTACTAAAACGATCTTAAGTAGCATAATTATTGAAAAACAATACACACTATAATATCTAGGCTATAAACTAAAATATAGCTCCATAGGCTATGACTCATTGACCCTATGTATTATTTTTCTTTTGAATAAGTAATTGCATACATTATTGTAATTTGATTCAAGTTCCAACTTGTATAAATATAAACAAATAAGGTTTTAGTCTATAACTAACGCATGTTCAACCAAGAAATGAAGCCAGAAACAACGAACAACATGATTCGGTCTCTCTCCTTTTATTTTACATTCAATTGTAATATCAAATTAAAGTAAACTTAGTTACCTAGATGCTACGACAATGATTTCTCGAAATACTAAATGCACAATTAATCTAGTGACATAATTATTACAACTATGACTAATATCAAGTAGGGCTTTAAACAAATTGAAGACTTATTTGAAATTAAATGGCACTTTTTCAGATATTTAATTCAAGGATTATGATGGCATGAAAAACACCTATATCACAAAGGAGTTGTTATTGTGTCATTTTTTGTAAATACCAAACAAAGAATTTAAGATATTAGAATAATATATCAATTAGATTTCTATAGCTTGCAATACGTATACAGATAAGAACAAACAAATACATTATTAGATATATAGACAATATAGCTAACACTTGCTTGCAATTACAAGGAAGTAATGTCAACTTTAGTGATACCATCCTTCTTAATTTGACTAAACTATTCACACGCAAAAATAAATAATTATCAGCAAGACATTGATAATATAAGCGCTAAATATTCCTTTCTTATTTGTAAATCTTGACAATGTAAGCAAGAAATGGATGTCATTTTATATTGAAACGAGCAGCGATGAAAACATACTCATTTTGTTTCGTTTTTTTTACCTTTTTTTTTTTTCACTTTTAACACATGCAAAAACATCTTAATTTGACTTGAATATTTGATAATTAATTCTATAAAAACTGTCTCCCACTCCCTACTGACCTTCTCAAGCCTCCTTTATCTTTCATCACAAAACCATAAAAATATAAATCTTGAAAAGTAAACGAAAGCTCTGGTGCTTCGCAGTAACCAACTCCTTATTCTCACCGTACCAATTCAATATATATTCCTTTCTTCTTCTTCTTCTCCTTTTGAACTAAAGTCAGTCGCGTTCTTAAACGCCTTCCGTTGTTATTTTGCTTTCTAATTCATGCTCCTAGATTAGAAAGTTTCTGTATTGAAGGTATGTTTATCCTTTTCTACTTCTATGTTTTTAAATTTGGGTTAAATGCATGTTGTGTTTTCCAGATCCAAGACTAACTGTAAATTTTATCCGCTTAGAATACGAAAATTTGACCAGGAACCGTAGATTAGTAGAGTGTATTTAGAAATTGGCCTTCTTACAAATTTTGATTTGAATCTGGATTTATCCGCTGTAATTCAAGTATGGCATTTTTCACGTTTGGTTACTTGATTTGACTGCAAAGCGTTTGCGATTATAATTAACATTGCAAATTATAGATATTGTCAATTGCTTTTAGAGATGTATTAATTAGGTAAAAAGACTATCTTTCGACTCTCTTTTTTTCTTCCTATTTCAATCCACTTACTTGGTCTGCAATGAAAGGAAGAGATTTTAGCATTTTTGGTAGTTTGCGTAACTTATTATACTTGCACAATTTCAAAATAGATCTCGCTTCATGTTCTGTCAATGAATAACGATAAGTTTGCTTAGTTTTTAATTCAAGTGTTGTTTAATTGTAGGTTCATTACTTCAGAAGCATGTGCATCCATTACTTATGTTATCCCTAAGCCACACCATAAAGTCAATGAAAATAAAAGTCATTGCCTTATTCTAAGCTATACTTTCATACTCTTTACTTTTTATAGACTTAGTTTTTCAAATTTTGAGAGAAATTCATTTTAGGTAGGTACTTGAATCAACAACTACCGTTTTACCAAGTTCTTTCATACGAGGACAAGTGCATACTATATTCAATTATGCTTCCATTAACTTATGTCATCTATTGATTGGGATAATATAGATGTCTTTCCGAAGTATTATGCGTGATGTAAGAGATGGATTTGGAAGCTTATCAAGAAGAAGTTTTGAAGTAAGACTATCTGGAAACTTGAAAGGGAAATCTAAGGGAGCGGTGCATGAGTTACATGATCAAGAACTGCTTGTTCAGGACTGCTGTTGGGCCAGTATTCCTCCTGAATTGCTTAGAGATGTGATCAAAAGGTTGGAGGAGAGTGAGAGTACATGGCCTACACGTAAGCACGTGGTTGCTTGTGCTGCTGTTTGCAAATCGTGGCGTGAAATGTGTAAAGAGATTGTTAAAAGTCCAGAGTTTTGTGGGAAGCTCACATTCCCTGTCTCTCTTAAGCAGGTACTTGATTCTTGTTATTTTGCAGCATTCACTAAGATTAAATGTGTTTAGTAATTGCTAATGGATCTCAGATCGATAGCCACTGAGGTGATACATGAGGAGAAATTTCATACCCCCCTCCCCTGCGGGCCCACAACCAAAAAAAATTGGAAAAGGGAAAAAGAAAAACGCTGCATATTGCTGCATTTTATCATTTTTAACCAGCAAATATTGTTGAGTGCAGTTTAAATTTTCATTCACCATAGTAACTTTGAGCGATATGTATATGTATTTCACCCAGCTATCCATTGCTAGATGATAAAATAAAGATGTAGGTGAACTGCAGTAAATTTTGTAGTGTATGCAGCAATGGTTCAGATGACAAAAATGCGAGACTCGTTTTGAACTGAGGTAATAAGAAATCCATTGTTAATAACCTGGAGTTAGAGCTGAAGGCATGGGTTAACCATTACAAAGCAAATACATGTAGTGATGAAGTCCTTTTTAATTTTCCTGAAATATCTATGTAATATTCTTTCTTTCTGTAATAAGGGTATAGGAATTTGAGTTAGTGGGTGGTCATTTTAAATACCGATGTGGATTGAAATAGTGGATAATATGCATATGAACGAGTACTGGTCACTGTACAATTAAGTTGGGTTTCTTGCAAATTTTTATATAGGGAAGTTAATGGCAGAAATCACCTAAAATTAGGTTGTTTTGCATGAAACTGGCTATCAAACACTATGTTCATATCTAGAATGTATCTTGCCTAATTCTTTAACTGTTCCTTAGCATGAAGAGATGACTAAGGTTTAAACATTTAGAATTTGCCGAATCATACAGCTTACAAATAACATGAATGGACCGAAACTTTAGCTTGCATATATTGTTATTTATGGGGAAGCATTTACCTTTTCAAGCAGCACCATTATTACCTAATCATTATAAAAAGAAGAGTACATGACGCTCCCTTGTAAATTTTATATATGGTTCTGTACGAACTACTTCCTTGCAGTACCGCCATTTGTATACCTTGTGCTTTATGGTTAAAGAAATTTTGTGAAAAAACCTCTAACAGAACTTGCTCATTTATACTTGAATTTTTAATGACGAAACATCAGTAATCAGAATAATGCAAAATTATATACATTGTTGTCTAATATTTCTTATTTTCATTTGGCAGCCAGGGCCTCGTGATGGTATGATTCAGTGTTTCATTAAGAGGGATAAATCGAAGTTAACTTATCATTTATATCTATGTCTGACTCCTAGTAAGATTTCTTTAGCTTATTCTTTTACATTACATCTTCCAGTATTTTAGATCTACTCTTCTCATAATTTTAGCAACATTTAGTTATTTTATTATTTGTTAACTTACATCTCAATGGCTGTATTTGTTTGATTCATTGCAAATTGTCCTGGAGTTGTTATAAAGTCTTGAAATAGTCTAAAGTAAATGATTTAAAATCTTTAAATGCAAACCACCTACACAATAACTAAATTATCAATACATAAATTTGATGCAACAAAATTCACTAATATTACATGAGGTATCTGTCATGATGTGTTTTGTTATATTCAGCAGATTTTTGGAGGGGACGTCAGACATTATGACACAGTTGGTGTAATAAAATTACACCAGCGTCTGAAAATTATTAAACATTTATTGCTTTTTAAGTCTTAACATGTCATTCAATTATGCAGCTGTGCTTGTTGAAAATGGAAAATTCCTCCTTTCTGCCAAGCGAGTTCGTCGCACTACAAGTACCGAGTATGTAATCTCTATGAACGCTGACAATATATCTCGATCAAACAAGACTTATGTTGGAAAATTGAGGTAACTCGATGTTTGTTATATGCATTCATCATTTTTTTTACATATGCACTTTAAAATTTTATCTTGGTTTAATGTTACTTAATAGAAAGTAAACATTTACGACCAAACTACTCCATCATACTATTATATGTATTGAAAGTGTGAAGTGAAGTTAGTTCATCTGTTTTGTGGTTGAAATCAAAATAGATGATCATCCATAGACATTATAAAACCGACTGATGGAAATAGTTGACTTTGCAACATGCCAACATGGACAATGTCTTCAAATCATCAAGTTGTTAATGCAAGTCATACAACTAAAAACCTGACGACAATTTATTTCAAAGGCTTTTTAAAAGTAGTTTTGAGTCGTAACTTTTAAGTAGTTTTCGGCGAATGATAAGAAGTAAAAGTGTTTGGATAGATAAGTTGAAACTGCGACAAAATTTAGTTGTAAAATCTGAAGTAAGTTATAAAGCAAGTAACTGTTGCTTATCAACCACACTAAACATCTCAAATTACAAAATAACTTATAAGCCAAACCCCATCTAATTGCAATGTGTTGTTTTTCTTGCTATCTAGGTCAAATTTCCTCGGCACGAAATTCATAATGTACGACACACAACCTCCTCAAACAACCTACCTCCTCCCCGAACCTGGGAAAACAAGTCAACGCTTCTACTCCAAAAAAATTTCTCCAAAACCCCCCACCACAACAAACAATTACAACATAGCCCAAATAGCCTATGAGTTCAACGTGCTAGGCACCCGCGGCCCGCGTAAAATGAACTGCACCATGTGCTCCATCCCGGCCTCTGCCCTCGAAGCGGGCGGGTCCGTCCCCAACCAACCCGATAGCATCATTTCTCGCCCGTACATCGGAGAATCTTCTAGAATAACCTCCTCTTCCTCCTCGTCCAAGTACATTGTATCGGAAAGTTCTAGATACTTCGACAGCAGTCGGTTTTCTAGCCTTGGGGATTCTGGAAGGGTATTACTGACCGACCATGAAAACATGGAGAAAAAAGAACTGCCTTTGGTTTTGCAGAACAAGGCGCCTAGGTGGCACGAGCAGCTGCAGTGCTGGTGCCTTAACTTTAAAGGGCGGGTCACTGTTGCCTCTGTGAAGAATTTTCAGCTTATCGCGAGTGTGCCGGCTGGGCAAAGTGCGCCTCCGGAGCATGATAAGGTTATACTTCAGTTTGGTAAGGTGGCGACCGATATGTTCACTATGGATTATAGGTATCCACTCTCGGCATTTCAGGCATTTGCTATTTGTTTGAGTAGCTTTGATGGGAAATTGGCATGTGAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010912431.1	9.7e-178	tubby-like F-box protein 14
Swissprot	Q75HX5.1	4.5e-164	Tubby-like F-box protein 1
trEMBL	A0A6I9QNI7	7.0e-178	Tubby-like F-box protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76900.1	64.29	9e-163	570	AtTLP1;TLP1	tubby like protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g415497	AT1G76900.2	462	129	9	193	625	1	455	64.29	9e-163	570
g415497	AT1G76900.1	462	129	9	193	625	1	455	64.29	9e-163	570
g415497	AT1G25280.1	453	133	7	193	625	1	445	64.46	9e-158	553

Ortholog group

Species	Genes
Allium cepa	g129578.t1; g415497.t1
Allium fistulosum	AfisC6G00582; AfisC6G01975
Allium sativum	Asa8G04648.1; Asa8G06208.1
Arabidopsis thaliana	AT1G25280.1
Oryza sativa	LOC_Os01g64700.1; LOC_Os01g64700.2; LOC_Os04g59130.1; LOC_Os05g36190.1; LOC_Os08g01290.1; LOC_Os08g01290.2; LOC_Os08g01290.3; LOC_Os08g01290.4; LOC_Os08g01290.5; LOC_Os08g01290.6; LOC_Os08g01290.7; LOC_Os11g06420.1; LOC_Os12g06630.1; LOC_Os12g06630.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00646.30	F-box	Domain	244	297	37.0	1.9e-09
PF01167.15	Tub	Domain	309	619	314.5	3.3e-94

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005829	C	cytosol
GO:0005488	F	binding
GO:0005543	F	phospholipid binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008289	F	lipid binding
GO:0008150	P	biological_process
GO:0009536	C	plastid
GO:0009605	P	response to external stimulus
GO:0009607	P	response to biotic stimulus
GO:0051707	P	response to other organism
GO:0009620	P	response to fungus
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0035091	F	phosphatidylinositol binding
GO:0043167	F	ion binding
GO:0043168	F	anion binding
GO:0043207	P	response to external biotic stimulus
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051704	P	multi-organism process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K19600	TULP1; tubby-related protein 1	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network