result

Gene information

Detail information of g415780

Location

Gene	Chr	Start	End	Strand
g415780	Scaffold_78609:HRSCAF_461695	98966	101044	-

Sequences

CDS

>g415780.t1
ATGCATCGTCAATACATCGTCGACCATAACTGTCCCTCCTCCCTTTTCTCCTCCTCTGCTCCCTCCGACCATCTTCCACCCAACAATGCCACGTCATCCTCCCAAGATATCCACCACAAGTTCCGCCACCCCCTTCCGCATCCGACGCATCCAACGCCTCATTTCGTGCAATTCGGGCATCCCGTCCCCATCACTCAGCAGCTGTTTCACCCCCAGCAGCTGACTCATCACCAGCATCAGTTTCAGCTCTACCACCATCAGCAGCAACATCAGCACCAGCATCAGCATCAGATAAGTTTAGACCAGGAATCCGAACCCGATAACACGAACTCTCCTGCCGCCTCCGGTCCAGCGTCGTTTCTTGCTGCCATGAATTTCAAATTAGGTCTCAGCGAGAGCAGCGGTGGCGGGACCAGCAGGGACGATGATGGTATTTTGCAAGGAGGAGGCGGAGGCGGCGGCGGCGATGACGGTGGATCCCGCCATCATGGTCATATTCTTTCCTGGAATGCCGATGTTGATTCTAATCAGGCGCATAGCCTCAAGCAGCCCTTTTGGAGGCCGCTAGATATAGATTATATTAACACCAGCGACAAGAGGCCATCAAAAGAAAAGCAGCAGATAGACATAAACCCGGATCCGAATCCAAACCCAAAACATTTCAAGAAGAACACGGAAGTTCTAATCGACCATGAAGGCAACTACAAACTGTTCAGTGAGCTTGAAGCCATATACAAACCCGGAGGAATACCCAACATCAACGACTGTGTCAATGCAGACGGCGGCGTCTTGATCAACTGCAACAATCAAACCGGGTCGGGTTCAGCCTTAACAGGCGACGAACATCCGCTACTCCCTGTATCGGCTCCTGAAGAGCCCACCATGGAAGATGATACCATTTCAGATACTTCCAATAATGAAGAGGCAATGCCTCAAAATATAGAAGCAGAAGATATAAAAGTTCAGAAAGGAACTGCTAGTAGTAGTGGCGCCAGTAGAAGAGCTAGGATTAAAAGAAGGCAGCAGAAAGAACTCGCTTCTATGGCGTTATTTTTTGAAACTCTTGTGAAACAATTAATGGACCAAGAAGAAAGCTTTCATCGTAAATTTTTAGAACTCATGGAGAAAAAGGATCAAGAAAGAAGTGTTAGAGAAGAGGCATGGAGGAAGCAGGAAATAGCAAGAGCGGATAAAGAGGCTGCTGCTAGAGCACAAGAGCGCCAGCTGGCGGCTTCTCGTGAGTCTGCCATTATTACTTTTTTGGAGAAGATTACCGGAGAGAGCTTGAAGTTGCCTTCTAAGAATGTTTGTCTAGATAAACAAATAGTTGAATATGAGAGTAATAGTATTGGAGTTCAGCAGAATAGTGGTAGGTGGCCGAAGGCTGAGGTTGAAGCATTGATACGGGTACGAAGCGGGTATGAAAACCGGTTCCAAGAACCAGGTTTGAAAGGGCAGTTGTGGGAGGAGGTGAGTTTAGCAATGGGAGGATTAGGGTATCAAAGAAGTGCGAAAAGGTGTAAAGAGAAATGGGAAAATATTAACAAGTATTTTAGGAAGACAAAAGAGAGTGGGAAGAAGAGGCCAAGGCATTCAAAGACTTGTCCTTATTTTCAGCAATTGGATCAACTTTATTCGGGTTCGAAAGCTAATGATAATGTGGGTGGGAATGGAGAAAGGAAGGGCGATTCAGAGTTGCTTGATGCGATTGTTGTGGTTAATGATAGTGAAATGAAAAGGAATGCTGAGTTTGGTGAGGATGGTAAGGAAGTAGATAACAATGAGGATGAAGAGGAAGGAGAAGATGAAAGCCAAGGACAGGGAGAAGATTGTGATGATGTTAACAAGACTAAACATGGTGATGCCATTCTTGCTTGA

Protein

Gene

>g415780.t1
ATGCATCGTCAATACATCGTCGACCATAACTGTCCCTCCTCCCTTTTCTCCTCCTCTGCTCCCTCCGACCATCTTCCACCCAACAATGCCACGTCATCCTCCCAAGATATCCACCACAAGTTCCGCCACCCCCTTCCGCATCCGACGCATCCAACGCCTCATTTCGTGCAATTCGGGCATCCCGTCCCCATCACTCAGCAGCTGTTTCACCCCCAGCAGCTGACTCATCACCAGCATCAGTTTCAGCTCTACCACCATCAGCAGCAACATCAGCACCAGCATCAGCATCAGATAAGTTTAGACCAGGAATCCGAACCCGATAACACGAACTCTCCTGCCGCCTCCGGTCCAGCGTCGTTTCTTGCTGCCATGAATTTCAAATTAGGTCTCAGCGAGAGCAGCGGTGGCGGGACCAGCAGGGACGATGATGGTATTTTGCAAGGAGGAGGCGGAGGCGGCGGCGGCGATGACGGTGGATCCCGCCATCATGGTCATATTCTTTCCTGGAATGCCGATGTTGATTCTAATCAGGCGCATAGCCTCAAGCAGCCCTTTTGGTTAGTTGTAAATTATTTTGTTTTACTCAAATTTAGTTTTGCATCATTCTATTCCTGTCTATTTTTTCTAAAGTTTTGCCCAGATTTGAATTTTGTAGCTTTAGTTTGATGCTGATATGTTTAAAATTGAATCAGCTGCTCTTTGAAGATGTTTTTAGTAACGAATTAATTTATCCAAAAATATTACTATTAATAATGCAGGAGGCCGCTAGATATAGATTATATTAACACCAGCGACAAGAGGCCATCAAAAGAAAAGCAGCAGATAGACATAAACCCGGATCCGAATCCAAACCCAAAACATTTCAAGAAGAACACGGAAGTTCTAATCGACCATGAAGGCAACTACAAACTGTTCAGTGAGCTTGAAGCCATATACAAACCCGGAGGAATACCCAACATCAACGACTGTGTCAATGCAGACGGCGGCGTCTTGATCAACTGCAACAATCAAACCGGGTCGGGTTCAGCCTTAACAGGCGACGAACATCCGCTACTCCCTGTATCGGCTCCTGAAGAGCCCACCATGGAAGATGATACCATTTCAGATACTTCCAATAATGAAGAGGCAATGCCTCAAAATATAGAAGCAGAAGATATAAAAGTTCAGAAAGGAACTGCTAGTAGTAGTGGCGCCAGTAGAAGAGCTAGGATTAAAAGAAGGCAGCAGAAAGAACTCGCTTCTATGGCGTTATTTTTTGAAACTCTTGTGAAACAATTAATGGACCAAGAAGAAAGCTTTCATCGTAAATTTTTAGAACTCATGGAGAAAAAGGATCAAGAAAGAAGTGTTAGAGAAGAGGCATGGAGGAAGCAGGAAATAGCAAGAGCGGATAAAGAGGCTGCTGCTAGAGCACAAGAGCGCCAGCTGGCGGCTTCTCGTGAGTCTGCCATTATTACTTTTTTGGAGAAGATTACCGGAGAGAGCTTGAAGTTGCCTTCTAAGAATGTTTGTCTAGATAAACAAATAGTTGAATATGAGAGTAATAGTATTGGAGTTCAGCAGAATAGTGGTAGGTGGCCGAAGGCTGAGGTTGAAGCATTGATACGGGTACGAAGCGGGTATGAAAACCGGTTCCAAGAACCAGGTTTGAAAGGGCAGTTGTGGGAGGAGGTGAGTTTAGCAATGGGAGGATTAGGGTATCAAAGAAGTGCGAAAAGGTGTAAAGAGAAATGGGAAAATATTAACAAGTATTTTAGGAAGACAAAAGAGAGTGGGAAGAAGAGGCCAAGGCATTCAAAGACTTGTCCTTATTTTCAGCAATTGGATCAACTTTATTCGGGTTCGAAAGCTAATGATAATGTGGGTGGGAATGGAGAAAGGAAGGGCGATTCAGAGTTGCTTGATGCGATTGTTGTGGTTAATGATAGTGAAATGAAAAGGAATGCTGAGTTTGGTGAGGATGGTAAGGAAGTAGATAACAATGAGGATGAAGAGGAAGGAGAAGATGAAAGCCAAGGACAGGGAGAAGATTGTGATGATGTTAACAAGACTAAACATGGTGATGCCATTCTTGCTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	PKA50131.1	6.3e-76	Trihelix transcription factor GT-2
Swissprot	Q39117.1	6.1e-44	Trihelix DNA-binding protein GT-2
trEMBL	A0A8J5HJ81	1.6e-81	Myb-like domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76890.2	47.50	8e-51	198	AT-GT2;GT2	Duplicated homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g415780	AT1G76890.2	240	92	5	333	545	252	484	47.50	8e-51	198
g415780	AT5G28300.1	256	100	3	351	546	302	557	37.50	1e-40	164
g415780	AT5G47660.1	233	123	5	333	545	163	388	35.62	1e-33	141

Ortholog group

Species	Genes
Allium cepa	g415780.t1
Allium fistulosum	AfisC2G01009
Allium sativum	Asa3G01037.1; Asa5G00377.1; Asa6G04766.1; Asa6G05790.1; Asa7G03385.1
Arabidopsis thaliana
Oryza sativa	LOC_Os02g01380.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13837.3	Myb_DNA-bind_4	Domain	458	544	79.1	2.3e-22

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network