result

Gene information

Detail information of g417819

Location

Gene	Chr	Start	End	Strand
g417819	Scaffold_78859:HRSCAF_461945	83927	85871	-

Sequences

CDS

Protein

Gene

>g417819.t1
ATGTTCGATTTGGATACTATCATAGCAGCAACAGACTATTTCTCGTCTAATAATAAACTCGGAGAGGGTGGATTTGGTCCAGTTTATAAGGTTCGCGTTTTCTCTCTTGTGCTTTACATTTTTTTTTTTTTTTTTTTTTTTTGAATATACAGATTGTATATGATATATCAGAAAATGCGATGATGTATATGTTGATCTAACACTTGATAGGAAATCAAACAGGGTAAACTAGGAGATGATCAGGAAATAGCAGCAAAAAGGCTCTCAAAAACATCAACTCAAGGTTCAGAAGAGTTCAAAAATGAAGTTAGGCTTATTGCCAAACTTCAACATGTAAACCTTGTTCGCCTTCTTGGTTATTGCATTCAAGGAGAAGAGAGAGTGCTTATATATGAATACTTGCCTAACAATAGTTTGGATGCATTCTTATTTGGTACACTTTCCTCTCTTTCAAAACTTCTTTTTTCAGTTTCACGCAAATTTGACACTTAAATTTTGCATTCAAGATGAAGAAAAAAGGTCATTGCTGAACTGGAATACTCGATATCAGATCATTATTGGAATCGCTCGAGGACTTCTCTATCTTCATCATGATTCCAGATTAAGAATCATTCATCGCGACCTTAAAGCTGGGAATATTCTTCTTGATGTGGATATGATTCCTAAAATCTCTGATTTTGGCATGGCAAGAATCTTTAGCAGTAATGAAACAGATTTCAATACTAGGAAAATCGTTGGAACATAGTAAGTATATCAGTTCATCATTATCAAACATAAATTACTCGATTCATAAAAGTAAATTTTAAACTATTTAACATTGTAGCGGATACATGTCTCCCGAATATGCCATGGATGGAGCATTTTCAATAAAATCAGATGTATATAGTTTTGGTGTGTTGGTTCTAGAAATTATAAGTGGGAAAAGGAACAGAGTTTATGCAAAACCACCTCATATTAATCTACTGGTCCATGTAAGTTTCCCGTATTTCATCTTTTATAGCATTATCGTAGCACTCTGCAACCCAAAATGTAAATAGTGTTCTTTCACATTTTCAGAATTTTTAACTGAAATGAAAAGGTTTCAAAACCAATACACCCGGGTCCATAGTCTACAATCTTGCCTATTTGATAACGTTCCTTGACATACAATGTTAAGGCGCTAATTAATACTTGGCATTAAGAAAAAGAAGTAGAAGAGAAGGTGAGGAAAGGAGGAAAAGGGGAACTAAGGCAGAGAGAATATAATTTATGAGAAATGATTTTGCAGCTTCTTCTTGTTTACATTCATTGGCAGTAGTCAAGATCCAATGTAAAATTAACATTTGTCCTATGCTGTAACAACTTCTGTTACAATAACTAAAGAAAATTATGCTTATCACTAATTATCCAACTGCTAATATTAACTGCGTGCAAATTGAATAGTCCCTCTTTCTAGAATGATTTGTAGAGGATACAAGGCAAAATTTGTTAGTACTAACTAAACCTTCATTCATTATAGCTCGTAGGTTTGCGCGCGCTAATATTTGGTGCATGCTCATGTTGGTACACCTCATTGAGCTGTTTCATACCACCAATCATCTTAACAGTATTACCATTTGTCACTGAGACATAATGCATGGTTTTCTATTACAATTTTTCTTCTTCACATATTTTCTGATCAAAACAGGCATGGAATTTATGGAAAGCAGGAGCCGGTATGCAATTAGCAGATGATTCAATGATCGACTCCTATTCGAGTGATGAAGTGTTAAGGTGTATAAAACTTGGGTTATTATGCGTACAAGAACAACCAGAAGACAGGCCTCTAATGTCATCAGTAGTGCAGATGTTCAGTTGTGATATAAAGACAATACCGCAGCCAAAGCATCCTGCTTTCATAGCAAGGAGATACAGTCAGGATTCTTGTTCGAATGAACAAAGTATTACAATGGTTGAACCAAGATAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020256477.1	1.6e-131	receptor-like serine/threonine-protein kinase SD1-8
Swissprot	Q9ZR08.3	6.9e-108	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230
trEMBL	A0A5P1F8I1	1.4e-129	Receptor-like serine/threonine-protein kinase

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G03230.1	59.46	5e-111	397		S-locus lectin protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g417819	AT4G03230.1	333	122	4	2	321	678	1010	59.46	5e-111	397
g417819	AT1G65790.1	312	108	3	9	313	514	825	63.14	7e-109	390
g417819	AT1G11340.1	304	114	2	1	303	570	872	61.84	8e-109	390

Ortholog group

Species	Genes
Allium cepa	g112745.t1; g157760.t1; g167949.t1; g167950.t1; g281083.t1; g417819.t1; g417822.t1
Allium fistulosum	AfisC3G04847; AfisC3G04970; AfisC5G03106; AfisC7G05141; AfisC7G05144
Allium sativum	Asa0G02200.1; Asa3G00974.1; Asa3G00977.1; Asa3G00979.1; Asa7G00057.1; Asa7G01017.1
Arabidopsis thaliana	AT4G05200.1; AT4G23230.1
Oryza sativa	LOC_Os01g26390.1; LOC_Os01g57510.1; LOC_Os01g57540.1; LOC_Os02g48080.1; LOC_Os04g15580.1; LOC_Os04g54190.1; LOC_Os07g30410.1; LOC_Os07g30510.1; LOC_Os07g35004.1; LOC_Os07g35260.1; LOC_Os07g35260.2; LOC_Os07g35310.1; LOC_Os07g35310.2; LOC_Os07g35370.1; LOC_Os07g35390.1; LOC_Os10g04720.1; LOC_Os10g04730.1; LOC_Os11g45540.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	17	283	170.7	3.2e-50

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005515	F	protein binding
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0005488	F	binding
GO:0005516	F	calmodulin binding
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019538	P	protein metabolic process
GO:0036211	P	protein modification process
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network