result

Gene information

Detail information of g422861

Location

Gene	Chr	Start	End	Strand
g422861	CHR1	337553097	337554874	+

Sequences

CDS

Protein

Gene

>g422861.t1
ATGCGAAAAAGCAAAAGTTTGGGAGATCTTCAATCCTGTGATAGGAACAAAAATCAAAGTGGGTATTCGTCGGATGGTGCTTTGATTGAGAAGTCCAAAAGAAGAATCAGAGAGGAGAAGAAACGAGGTAAATTATTGAAATTTTCCAGTTATTGTTAAATATGCTATATTATTCTATTTAAATTAAATTAGTTTTTTGATTTTTTTCGTTTTCTTTTCTTTTTTTACGTTGATGCTAGTTATCTTATTGCATGTGGCTGAGTTAACTTGGATTACGTATAATAATTTCATGTATATATGGATCGTTCAGTTTGAGAATCATACAGTAATTTGTGACTTATTAAGGGATGCATTGTAGAGATGTAAGAAGATTTTATCAGATCATGAAGGAATCGATAATAAGTTGACATGGAACTTTAATTTTGTTGTGTTTAATCATCTGAAACAGAAGATTTGTCCATGATTACTAACAATGATAGAGTTGGATGTTGGATATATGCAAACCTATTGGTTGTGTTTTAGCATGACCACATCGAAATGTTGGATATATGCAAACCTATTGGTTGTGTTTTAGCATGACCACATTGAAATGCTACTTTAGCTGGAAAATAATGGTGGTATGTTTTTTAAAGCATTGCATGCATTTTTGATCTATACCATCCTTAATATATTTTTGTTATAGGAATGGAATGGAATTTCTTATATATAGACACATTTCTGTTTTTGTTTTACATATTAAATGTCAATATAGGATTAGCTTCTTAACATTAATATTTTGAACTGATGTTGTGATATGTACAATCAAACGAACATAAATAATTAGAAATAGTGATGAAAAATGCAAAAAAATCAAAAAGGGACTTAAAATTACATTACTAATTTTGTCATGACAAGCAAAAATTGTACATATTCAACTGTAATTATAAAAGCCAACAATCACTGATAATGCTAGTAGGTTCATTTTTTTATTTAAATAATAGTCAAGTTCAAAACAAAAATAGTAATCATATTTAAAGAATTCAATCTTTGCTAATACAGGAGTGCCATGGAGTGAAGAAGAACACCGCAATTTTCTTATTGGGCTTGAACATCTTGGAAAAGGGGACTGGAAGGGAATTTCAAGAAATTTTGTGCCAACAAGAACCCCAACTCAAGTAGCAAGTCACGCTCAAAAATATTTCCTTAGGCAGAGTAATCAAAACAAGAGAAGGAGGAGATCCAGTCTCTTTGATGTAGGAATCAAAGATAATGTAATTAACCCTTGCTTTTCGCAAATTTCTATTTTTATTTATTGAGAAATGAAGAAATCTCATGTTTTATAATGCAATTTTGCAGGCTGCTCTTAACCAATCTGAATTCCCCACTGAAGTGCTTTCTGAGCAAATTGATGCAGTGACTAGAAGAACTAACGTGGTAAAAATTTATACACACAAATGAACTTATAGTTTCATACTACACTCTTTTGCATTGATAAAATTAACTTTTATAATTTTACTTCAGGGCAATCCAACACCCATGTTTTCCCCGCAAGCTAAGTCTCCTGAGCTGGAAGCACCTCCAAAATCATCTTTTCTTGGAAATTACAACTGCACTCAAAGTACACACAGTCTCATGGTAATCAAACTTATTCATATGTTAATTTGTTTATTAAGACCATGAAATAGCTGTTCTGCTAATATTTGAAGTGAAATTCCCAGGGTACGGGCATGACTTGCAACCCTAAGTTCTTGAGCAGTGCAAATTACCCTAATTTTCTCCAGTTATCCTTGGGTAATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020248378.1	1.2e-41	probable transcription factor At5g61620
Swissprot	Q9FKF9.1	3.4e-28	Myb-related protein At5g61620
trEMBL	D6MKL4	6.4e-40	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G61620.1	54.03	1e-32	135		myb-like transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g422861	AT5G61620.1	124	44	2	1	112	54	176	54.03	1e-32	135
g422861	AT5G47390.1	88	27	1	21	108	76	160	65.91	1e-29	126
g422861	AT5G56840.1	121	48	4	1	119	53	167	53.72	2e-28	122

Ortholog group

Species	Genes
Allium cepa	g422861.t1
Allium fistulosum	AfisC1G00231
Allium sativum	Asa7G00676.1
Arabidopsis thaliana	AT1G19000.1; AT1G19000.2; AT1G74840.1; AT1G74840.2
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	45	89	40.9	1.5e-10

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network