result

Gene information

Detail information of g423636

Location

Gene	Chr	Start	End	Strand
g423636	Scaffold_79521:HRSCAF_462607	436172	439405	+

Sequences

CDS

>g423636.t1
ATGGAAAGAGCTAAAAATATATATTTTTTACTTAATAAAGATACGACGGAAGCTGGGATCCGACCCGTTAAGGAGAATGCTTCAAATCCACCTTTGGGAAACAGCCACGTACTTCAAAATCTCTTTTTCCTTGTTTCTTCTTCTTCCTCTTTACTCAAAACCATTAAAAAAAAAAAAACAATGGAAAAAGCTAGTGGTGGTGGTATGAGTTTGAACACAATGTCATCAAGTCCGATACCGTTTCTTGACCATGAAAGTTCGCCGATGAAGAGGAAGCAATCATCAACGGCGCCATTATTTCAACAGCAATTTGAGCTCTTGATTCCTCAGCATGATCACGCAAAGTCTAAACACGTCTATGAAATGGATTTCTTCTCAAACGAGGAAAAGAAAGCACTTTGTGATACAAACGTCGATCTTAAAGCTTCGGAGAGTATTATCAAGAAGGAAGATTTGACTATAAATACCGGATTGCACCTTGTAACTTCAAACATTGGAAGCGATCGATCAATAGTTGATGATGGACCATCGCCTGCAAACGATGAAGATAAAGAAGCAAAGAATGAGTTAGAGAGGATACAAACTCAAATGGCACGTATGATAGAAGAGAATCAAAAACTGAGAGGAGTATTAAGCCAAGTGACCCACAGTTACAATGCTCTACAAATTCAGTTCATCGCCCTCATGCAGGGCCAACAAAACACAACAAATAATGTAGATGAAGTAAAAGCAGTAAGCGTAAAGAATCAAGAAAAAGCAAGCGCAATGGTGCCTAGGCAATTCATGGATTTAGGACCGGCATATGCTAATGAATCTAACATAGGCAAGCCATCTCAATCTTTAACTGAATTTCATAGTACTGAGAGTGCTTCTTCTCCTACGATCAGCAAAGAAAATAGCCTGGATCAAGCACAAACATTGCCTTCTTCCAAAGGTTCACAAGAGCCACAAGAGGCTACCATGAGAAAAGCTCGTGTTTCTGTTCGTGCTCGATCAGAAGCCCCCATGATTACAGACGGATGTCAATGGAGAAAATATGGGCAAAAGATGGCAAAAGGAAACCCATGCCCACGGGCCTACTACCGGTGCACCATGGCGACCGGTTGCCCGGTTCGCAAACAGGTACAAAGATGCGCCGAAGACCGTACGATCCTAATAACGACCTACGAAGGCAATCACAACCATCCGTTGCCTCCAGCAGCCATGGCCATGGCATCTACCACCTCCGCCGCCGCATCCATGCTTCTATCCGGATCAATGTCCAGCACGGATGGACTCATCATGAATGGAGCAATGCTGCCGTGCTCGTCGAGCTTAGCCACCATTTCGGCTTCTGCTCCGTTCCCTACCGTTACTTTGGACCTGACCCAGAATCCAAACCCGTTACAGTTTCAGAGGACGCCTTTTCATATGAACTTCCCACAGCAGCCGCAGTCTTTGCCACAAGTGTTTGGGCAGAATATGTACAGCAGTAATCAGTCAAAGTTTTCTGGGGTTCAAATGTCGTCCGATGCAGTCAGTGCTGCTACTGCTGCGATCACCGCTGATCCTAATTTCACGGCCGCTTTAACGGCTGCGATTAAATTAATGATTGGAGGTGGTAATGGTGCCAACAACAATGATGGTTGTGGTGGCAATGGTTTCAACCCTGATACTTCGTTTAGTTCTTAA

Protein

Gene

>g423636.t1
ATGGAAAGAGCTAAAAATATATATTTTTTACTTAATAAAGATACGACGGAAGCTGGGATCCGACCCGTTAAGGAGAATGCTTCAAATCCACCTTTGGGAAACAGCCACGTGTAAAAATAACGTAAAGTCCGATGTCATTCACCGTATTCAACCCTTTTTATTGCCAACCTCTCCTCATGACCTAAAGACTTCAAAATCTCTTTTTCCTTGTTTCTTCTTCTTCCTCTTTACTCAAAACCATTAAAAAAAAAAAAACAATGGAAAAAGCTAGTGGTGGTGGTATGAGTTTGAACACAATGTCATCAAGTCCGATACCGTTTCTTGACCATGAAAGTTCGCCGATGAAGAGGAAGCAATCATCAACGGCGCCATTATTTCAACAGCAATTTGAGCTCTTGATTCCTCAGCATGATCACGCAAAGTCTAAACACGTCTATGAAATGGATTTCTTCTCAAACGAGGAAAAGAAAGCACTTTGTGATACAAACGTCGATCTTAAAGCTTCGGAGAGTATTATCAAGAAGGAAGATTTGACTATAAATGTAAACTTCAATTTTTATTTTTTTTTCCTAATTGAGTTGTTATTACATATTGTATATTTTGTTCGATTCCATATTGTTTGCTGATATAGAACAATCTTAGTAAATACAGTATTTTCTAAGAGTCGTCGATTACCAGGATCATGTAAAAACTTCTTTTTTCCCACCATTGCTATATTAATCAAACGCAAACTTATAATTAACTTAGATTTTATTATTTGTATTTATTGATTTCTTTTATGGGTTTCATCAGACCGGATTGCACCTTGTAACTTCAAACATTGGAAGCGATCGATCAATAGTTGATGATGGACCATCGCCTGCAAACGATGAAGATAAAGAAGCAAAGAATGAGGTAATAATTAAGCAATAAATATTTGACTAATTTATTATTTTGCTTCAATTGACAGCTAGCTGATTTGGAAACAATCATATCTCAGTCAAACATTAATGTCAATTACAGTTAGAGAGGATACAAACTCAAATGGCACGTATGATAGAAGAGAATCAAAAACTGAGAGGAGTATTAAGCCAAGTGACCCACAGTTACAATGCTCTACAAATTCAGTTCATCGCCCTCATGCAGGGCCAACAAAACACAACAAATAATGTAAGAACATTTTCCCCATATTTTATAAATTCCATGTTGCACTATACTTATTTCTCTTTATTTGAATCATTATGTAGGTAGATGAAGTAAAAGCAGTAAGCGTAAAGAATCAAGAAAAAGCAAGCGCAATGGTGCCTAGGCAATTCATGGATTTAGGACCGGCATATGCTAATGAATCTAACATAGGCAAGCCATCTCAATCTTTAACTGAATTTCATAGTACTGAGAGTGCTTCTTCTCCTACGATCAGCAAAGAAAATAGCCTGGATCAAGCACAAACATTGCCTTCTTCCAAAGGTTCACAAGAGCCACAAGAGGCTACCATGAGAAAAGCTCGTGTTTCTGTTCGTGCTCGATCAGAAGCCCCCATGGTCAGTCCATTTTCTATATTACTTTACTTCTCTAAAATTTACATATAAGAGGGTCACCATTTAGATATTTGGATTTGAAACTTTGTCTCTTATGATTGACATTTATCTAGAGGTTTCAAGATTTTAAATCGTATGATCAGTAAATGAATCGCCTTGGCACGATGATCAAACTTGTTTTCATGCTAGAGAACCGCTTATTACTACAGAAAATATGGACTTCGAAGTTGCATTTGTTTGAAATTCTTAGTACTGATTCATGTATACTTAATGTGGGTACAAATTTCCAATATATAGAATTCTGCAAAGAAGTTCTTTTAGTTTCATGATCATTTTTTTTTTCTTCACAAAATTTCCTAAATTTCAACTGATTGGAGTTGGACACATCAACACACCATAAACTAGGTTTAGGTTAGATGATTTATAGCCACTTAATACTCAATACTATGATTGGTATGATACTAGGTAGAGAACCATAAATCTCTATCTCTATTATTTATTAAAAAAAAAAAACCAACCTATAGAATTTCCACATTCTCTTTTCGAAATTTCAATAATAACTTGAATACCATCCGTTTTTTCATCAATTATTAATGGAGTAACATTATCGATTCATAGAATTCACCATCATCTCTGACGTGACCATCCATCAACGAAATCTTATTATAACTATTTGCAATAAAGGCGTCTATGACCACTAAAGATTCTTCACTTATAACAGACATGATAAAAACAACTTAATTGTAAATAAATTGTTTTTTTCTAATTAAATATCCTAAAATAAAAAGTAAACATCTTTATTTATCAGACGAACACATGTGTGTGCATTTAAACTAGTTATTAGAAAATAAATAGACTCAAGTTCGAATTGTTTCTAGTGTAGTGCTAAAAGCAAAGAAAATTCACACTTATTGCTACATGATGCGATATAAGAAAGTGCAAAATCTAACATCTTTAGCACCAACATAAGCCTAAACTCTAATGAATTCAGCAGTACACTTTGTTTTAAATATTGAATACCGAATATTGAAATTGTCTGTTTATGATTTTATAGATTACAGACGGATGTCAATGGAGAAAATATGGGCAAAAGATGGCAAAAGGAAACCCATGCCCACGGGCCTACTACCGGTGCACCATGGCGACCGGTTGCCCGGTTCGCAAACAGGTACAAAGATGCGCCGAAGACCGTACGATCCTAATAACGACCTACGAAGGCAATCACAACCATCCGTTGCCTCCAGCAGCCATGGCCATGGCATCTACCACCTCCGCCGCCGCATCCATGCTTCTATCCGGATCAATGTCCAGCACGGATGGACTCATCATGAATGGAGCAATGCTGCCGTGCTCGTCGAGCTTAGCCACCATTTCGGCTTCTGCTCCGTTCCCTACCGTTACTTTGGACCTGACCCAGAATCCAAACCCGTTACAGTTTCAGAGGACGCCTTTTCATATGAACTTCCCACAGCAGCCGCAGTCTTTGCCACAAGTGTTTGGGCAGAATATGTACAGCAGTAATCAGTCAAAGTTTTCTGGGGTTCAAATGTCGTCCGATGCAGTCAGTGCTGCTACTGCTGCGATCACCGCTGATCCTAATTTCACGGCCGCTTTAACGGCTGCGATTAAATTAATGATTGGAGGTGGTAATGGTGCCAACAACAATGATGGTTGTGGTGGCAATGGTTTCAACCCTGATACTTCGTTTAGTTCTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010916103.2	1.4e-114	probable WRKY transcription factor 31
Swissprot	Q9C519.1	1.9e-81	WRKY DNA-binding protein 6
trEMBL	A0A6I9R0Q9	9.8e-115	probable WRKY transcription factor 31

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G04450.1	48.39	1e-105	380	AtWRKY42;WRKY42	WRKY family transcription factor

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g423636	AT4G04450.1	498	178	16	105	531	14	503	48.39	1e-105	380
g423636	AT1G62300.1	478	169	14	121	546	89	550	50.42	2e-105	379
g423636	AT4G22070.1	516	176	16	101	533	14	516	47.29	8e-91	331

Ortholog group

Species	Genes
Allium cepa	g423636.t1; g434073.t1
Allium fistulosum	AfisC3G08811; AfisC7G02642; AfisC8G01650
Allium sativum	Asa0G01254.1; Asa1G01967.1; Asa2G07276.1; Asa3G04980.1
Arabidopsis thaliana	AT1G62300.1; AT4G04450.1
Oryza sativa	LOC_Os01g14440.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	339	396	92.6	1.3e-26

Gene Ontology

Accession	Ontology	Name
GO:0001067	F	regulatory region nucleic acid binding
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005488	F	binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006950	P	response to stress
GO:0007154	P	cell communication
GO:0008150	P	biological_process
GO:0009267	P	cellular response to starvation
GO:0042493	P	response to drug
GO:0009605	P	response to external stimulus
GO:0009889	P	regulation of biosynthetic process
GO:0009890	P	negative regulation of biosynthetic process
GO:0009892	P	negative regulation of metabolic process
GO:0009987	P	cellular process
GO:0009991	P	response to extracellular stimulus
GO:0010033	P	response to organic substance
GO:0010036	P	response to boron-containing substance
GO:0010200	P	response to chitin
GO:0010243	P	response to organonitrogen compound
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0010558	P	negative regulation of macromolecule biosynthetic process
GO:0010605	P	negative regulation of macromolecule metabolic process
GO:0010629	P	negative regulation of gene expression
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0033554	P	cellular response to stress
GO:0070887	P	cellular response to chemical stimulus
GO:0031323	P	regulation of cellular metabolic process
GO:0031324	P	negative regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031327	P	negative regulation of cellular biosynthetic process
GO:0031667	P	response to nutrient levels
GO:0031668	P	cellular response to extracellular stimulus
GO:0031669	P	cellular response to nutrient levels
GO:0042221	P	response to chemical
GO:0042594	P	response to starvation
GO:0045934	P	negative regulation of nucleobase-containing compound metabolic process
GO:0048519	P	negative regulation of biological process
GO:0048523	P	negative regulation of cellular process
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051172	P	negative regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0051253	P	negative regulation of RNA metabolic process
GO:0051716	P	cellular response to stimulus
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071496	P	cellular response to external stimulus
GO:0080029	P	cellular response to boron-containing substance levels
GO:0080090	P	regulation of primary metabolic process
GO:0080169	P	cellular response to boron-containing substance deprivation
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1901698	P	response to nitrogen compound
GO:1901700	P	response to oxygen-containing compound
GO:1902679	P	negative regulation of RNA biosynthetic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:1903507	P	negative regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000113	P	negative regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network