result

Gene information

Detail information of g427042

Location

Gene	Chr	Start	End	Strand
g427042	CHR2	93736398	93738464	+

Sequences

CDS

>g427042.t1
ATGCTCGTCATCTTCTTCTTCTTGCTCTGCTTAAATCCATTCTCAATATCATGTACATCAACAAATGACACATATACTCTCACCAAATTCAGGCAAAGTGCAGATATACATGGAAATTTAGCCCTAAATTGGAGCACATCTAATGCTTGTGCCTGGACTGGCGTATTATGCTCTCCTATTACAGGTAGAGTCATTTCCCTTTCTCTTCCTGAGTTCGACCTTCATGGTCCCCTCGACGTGCTTTCAGGCCTCGACCAGCTCCGTTTCCTCCGTCTCCATTGCAATAGCCTTAATGGAACTCTCTTCTCCATTATCTCCTCGTTATCTCATCTGAAAGTAATCAGTCTATACAGAAATGGTATTTCAGGTTCTATACCACAACAACTGGGCTTACTTAATCATTTAGTGCATGTAGATATGTCCTACAACAAACTTGAAGGTCCCATTGTTTCTAGTACATTCTGGAACCTCAGTCAACTCCTCACATTTTATGCTCACTACAATCGTCTCTCTGGACATATACCTGATCTTACAGTTGTTTTGCCTAAACTGTCGAAATTTAATGTTTCATATAACATGTTATATCGCAATGTGCCCCATGCCATGATTATGAAGTTTGGTAATACTTCTTTTTTGAGGAGCGAAAATTCTTTACCAGAACCTCAGCTTGTGGCCGCTTGTATTTCAGGATTAAATTGTTCAAGTTCTGGCAATACAGATGAAAAGTGGCCATTAAAACATGTGATAATTTTGATTCTTACCGAGAATGTCGCATTTATATTTGTGTTTATGTTGTTGGTGGCCTCTTTCTGCTTCTATTTTAATTGTAAAATATGGAAGAAAAGAAAAGCAGTAGATGCATGCCAAAAAGAAGTTAGGAAAGAAGGAAGTAAGCAAATGGAAAATAAAGACGATTCAACTGAAGAGAGTGACAATTCTGAAGAGGAAGAAGATGCGGTGATGCAAAGCAAGTTGGTATTTTATCAAGAACCAAATTACAATAATAGTAACATCACTGCAAGAGATGTGTTTGGGATAGAAGAGCTTCTTTGTGCTTCTGCGGAGATGATAGGAAAGGGTAGCGTTGGAATAGTGTATAAAGCGGTGCTCGAGAATGGCTCAACAATTGCAGTGAAGAGGCTCAAGAGTTCTAATACTTTTAACCACGATGAGTTTCGCAATTGCATGGATGTTATCGGTAATGTTGGACATTCTAATGTCCTAACTTTAAAGGCTTACTATGCTCCTCAAGGAAGGCTTCTTATCTACAACTACCTTCCCAAAGGCTCATTACACTCCCTTCTTCATGAAAATCGAGGAGGCAGAAGGTGCATGAAACTTGATTGGACTAGGAGGATAAAAGCAGTACTTGAAAGCGCTCGGGGACTTGCTTACATTCACCAATATTATGGTTGGCATGGAAACATCAAGTCCCCAAACATACTAGTTGGTTATAATGGAACTGCTTGCATCTCCGACTTTGGCCATGCACGACTTATCGATCCAGAAAGAGTCATATCAAAACTGGGAGGATACATTGCTCCAGAACAGAAAGAATGCATCAAATGCAAAATGAAAGAAAAAGTCTTTTCAGAAGAGGTGGATGTTTATGCATTTGGAGTGGTTATACTTGAAGTGATAACTGGAAACACACATACACTGTATCCTTCAAAATATAAAAGAAATATGAACAGATACAGAAGTCCCATAAGCCTTATTGAGTGGGTGGAGTTTGTGGTTAATGAAGAATGGAGCACTGAAGTTTTTGATCCAGAACTGATGGGAAATAGTAACGACGAGGATGAGATGCTGCATATGTTACATATTGCTATGAAGTGTGTTGATTACAGTGCTGAGAATAGGCCTAAAATTATTGATGTTGTTAAGTTTATAGAGGATAATATTGGTATAGAGGAGCGTTAG

Protein

Gene

>g427042.t1
ATGCTCGTCATCTTCTTCTTCTTGCTCTGCTTAAATCCATTCTCAATATCATGTACATCAACAAATGACACATATACTCTCACCAAATTCAGGCAAAGTGCAGATATACATGGAAATTTAGCCCTAAATTGGAGCACATCTAATGCTTGTGCCTGGACTGGCGTATTATGCTCTCCTATTACAGGTAGAGTCATTTCCCTTTCTCTTCCTGAGTTCGACCTTCATGGTCCCCTCGACGTGCTTTCAGGCCTCGACCAGCTCCGTTTCCTCCGTCTCCATTGCAATAGCCTTAATGGAACTCTCTTCTCCATTATCTCCTCGTTATCTCATCTGAAAGTAATCAGTCTATACAGAAATGGTATTTCAGGTTCTATACCACAACAACTGGGCTTACTTAATCATTTAGTGCATGTAGATATGTCCTACAACAAACTTGAAGGTCCCATTGTTTCTAGTACATTCTGGAACCTCAGTCAACTCCTCACATTTTATGCTCACTACAATCGTCTCTCTGGACATATACCTGATCTTACAGTTGTTTTGCCTAAACTGTCGAAATTTAATGTTTCATATAACATGTTATATCGCAATGTGCCCCATGCCATGATTATGAAGTTTGGTAATACTTCTTTTTTGAGGAGCGAAAATTCTTTACCAGAACCTCAGCTTGTGGCCGCTTGTATTTCAGGATTAAATTGTTCAAGTTCTGGCAATACAGATGAAAAGTGGCCATTAAAACATGTGATAATTTTGATTCTTACCGAGAATGTCGCATTTATATTTGTGTTTATGTTGTTGGTGGCCTCTTTCTGCTTCTATTTTAATTGTAAAATATGGAAGAAAAGAAAAGCAGTAGATGCATGCCAAAAAGAAGTTAGGAAAGAAGGAAGTAAGCAAATGGAAAATAAAGACGATTCAACTGAAGAGAGTGACAATTCTGAAGAGGAAGAAGATGCGGTGATGCAAAGCAAGTTGGTATTTTATCAAGAACCAAATTACAATAATAGTAACATCACTGCAAGAGATGTGTTTGGGATAGAAGAGCTTCTTTGTGCTTCTGCGGAGATGATAGGAAAGGGTAGCGTTGGAATAGTGTATAAAGCGGTGCTCGAGAATGGCTCAACAATTGCAGTGAAGAGGCTCAAGAGTTCTAATACTTTTAACCACGATGAGTTTCGCAATTGCATGGATGTTATCGGTAATGTTGGACATTCTAATGTCCTAACTTTAAAGGCTTACTATGCTCCTCAAGGAAGGCTTCTTATCTACAACTACCTTCCCAAAGGCTCATTACACTCCCTTCTTCATGGTATCGTTTATTTTCCGCTAAACTCATAAGATTGAATCACTAATTATGCAATCCCTTAGGCTCAAAATTTATCCTTTAGTGTCGTCGTAAAATTTATGAATATGAATACGTTTATATTAGCCTCATTTCATGTTAAATGAATAGAAAATCGAGGAGGCAGAAGGTGCATGAAACTTGATTGGACTAGGAGGATAAAAGCAGTACTTGAAAGCGCTCGGGGACTTGCTTACATTCACCAATATTATGGTTGGCATGGAAACATCAAGTCCCCAAACATACTAGTTGGTTATAATGGAACTGCTTGCATCTCCGACTTTGGCCATGCACGACTTATCGATCCAGAAAGAGTCATATCAAAACTGGGAGGATACATTGCTCCAGAACAGAAAGAATGCATCAAATGCAAAATGAAAGAAAAAGTCTTTTCAGAAGAGGTGGATGTTTATGCATTTGGAGTGGTTATACTTGAAGTGATAACTGGAAACACACATACACTGTATCCTTCAAAATATAAAAGAAATATGAACAGATACAGAAGTCCCATAAGCCTTATTGAGTGGGTGGAGTTTGTGGTTAATGAAGAATGGAGCACTGAAGTTTTTGATCCAGAACTGATGGGAAATAGTAACGACGAGGATGAGATGCTGCATATGTTACATATTGCTATGAAGTGTGTTGATTACAGTGCTGAGAATAGGCCTAAAATTATTGATGTTGTTAAGTTTATAGAGGATAATATTGGTATAGAGGAGCGTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_006481916.1	5.8e-93	leucine-rich repeat receptor-like protein kinase PXC1
Swissprot	Q9SJQ1.1	3.0e-86	Protein PXY/TDR-CORRELATED 1
trEMBL	A0A067F0X0	1.2e-92	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36570.1	40.21	2e-119	426	PXC1	Leucine-rich repeat protein kinase family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g427042	AT2G36570.1	654	321	17	20	633	21	644	40.21	2e-119	426
g427042	AT3G08680.2	661	352	24	2	633	4	613	34.64	5e-83	305
g427042	AT3G08680.1	661	352	24	2	633	4	613	34.64	5e-83	305

Ortholog group

Species	Genes
Allium cepa	g427042.t1
Allium fistulosum	AfisC2G06416
Allium sativum	Asa6G03847.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08263.9	LRRNT_2	Family	22	58	22.7	8.1e-05
PF00069.22	Pkinase	Domain	354	626	104.2	6.8e-30

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0016020	C	membrane
GO:0005623	C	cell
GO:0008150	P	biological_process
GO:0009832	P	plant-type cell wall biogenesis
GO:0009834	P	plant-type secondary cell wall biogenesis
GO:0009987	P	cellular process
GO:0042546	P	cell wall biogenesis
GO:0044085	P	cellular component biogenesis
GO:0044464	C	cell part
GO:0071554	P	cell wall organization or biogenesis
GO:0071669	P	plant-type cell wall organization or biogenesis
GO:0071840	P	cellular component organization or biogenesis
GO:0071944	C	cell periphery

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network