result

Gene information

Detail information of g429492

Location

Gene	Chr	Start	End	Strand
g429492	Scaffold_80191:HRSCAF_463277	85349	88961	-

Sequences

CDS

Protein

Gene

>g429492.t1
ATGGAAGAAGAAAATGTTTTGGCCATTGAGGTAAAGGATAGTAGAAAGAACTAAGAATTGATTATTATGAAGGTCAAATAAGTAAATTTTGTTTATTTTTATATGAAAAAATAAATTTCTACTTTGATTTTTACCCAAACAAAATATTTTAATCAAAAAATCTCTCTCTCATCCATTCCCCTTGGGTAAATTAATTATTTCTTTCAACAATATATACAAAGAAGGGTATGGTTGAATTAGTTTGTCAGTAATTTTAGAGCATCTCCAATCCTAGAAAATGTAATTTCATGAGATGTCTACGTGGCACAAGCAGTTAGACAATGTTAAGTTAATGTGATTTTACATTACAATAAAATAAATTAATATTCTCCAATGCAAACATTTTTATGTATTGAAATTACTTAGGTGTCAAAAAGTTATTGGTAGTTACCTTTTCACATTGTTAATTACAATGTCTAGAGGTAGACATTTCAATTCACAATGTCTAACAAAAATCATGCCACGTCATATTCCACAATCTAATTACTTTAGCATTGGAGATTAAAAATAATACCACAATGTCTAGTATCTATGTGGCATTCACTTTACATTTAAAATGCATAAGGGTTGGAGATGCTCTTAGCAGACATAATTTATTTTATACATTTAAAAGATGAAGTTACTTGCTAAAAACAATGTTGTATCACAACCAAAAGTTTAATTAATCCACGTAAATGATTTAATAACTTCATTAATCAACGTTGACAAGATGAGAAAATTAATTAATCATTGTATATAATCCGACGAAAGCAAAATTTATATATTGGTTTGAGGATGAAAAACGAGTTCAATATTATTATCTAAAATAAAATCCGCCACCTTTGATTAAAATGCGTGCAAACGTCATTGCATGGAATGGATTATTTTATCTTTTGATTCTTTGACAATTCCACAGCTTAAAGAGTTACATACGATTGAGCACTTCGCATTAGAGTGGGAATTGCATTATTAAAGCCACCTATCCTTTTCTAGGACAGCCAGATTATATTCAACTGGGGGCAAGTGATAAGAACAAAAAAGATGGGAAATATCTTAACATGTATTCATTCTTTAAGCATATGAATATATTAAAAATGGATATTTTACGTGTTGGTGATGGATCACATTTGTTTATTTGCCGACAAATCTTCTAGTCAGAACAAGTGATTGCATCCAAAAAAAAAAAAAAGGTTTACTATTAATCGTCCAGTCCACAAATTTAATCTTTATAGACAAGTCAGAATATTTTCTAAGACTTGGTCGGATAATCTTATGTTACTTACGTAAACAGGGTAATTTACAACATTTATAAATGTATTAATACGTCAATCTGTTTTATCTTTAGTGAAACTATATATTTAGTAATTTTTGTGTCTGAACCTAACGCATATCTTATTTTGTCTGTAAATTGTTACCAGAAACATCTAGAGTGTTATTCTTACCTTTTTAGATTATATGTTTCCATTAAATGACGTAAATGGTTATGGGCCAAGTTCCTTCATGCTAAGTACGGAAGACTGGCGTCCTCTGGTTATGGAGGCTCTCCTTGTTATGTCAGTGAGACTTGAAAGCATATGCAATCGATCAAATTGCTCGTTGATTCTCATAGCGGTCACACCGGTTGAGATGGTGGTCCGTTTTCTATTCTTAAGGCCTGGAGCTCTTCTCGAACTACATCTCCAGTCTTTTCTCTTTTTTCCTTCATTTGGGACGCTCGAATTTCTCCAAAAGTCTCTCTCCTCATGTGGCGAACTTTCCATTATGGGTTACCGGTTGATGAGAACCTCCAACAGATTGGCATTCCGTTTGTTTCCCGATGCAGGTGCTGCGGCAATGGGGAAATAGAATCGATTAATCATTTGCTTTTCGGTGGCTGGTGTGCCAGATCCTACTGGAATTATTTCGATAATTTTTTGGGTGTCCGTGGCATCATCACCTCGTCGAATGATTTGCTGTCATCTTGGTGGTTTGATTGCTCTGGGAAATCTCTTCGCTCTATCGTCTTTCGCTTGATACCTTGTCTGATTTGCTGGCATGTCTGGTGTGCGTGAAATAATGCAATGTTTGAAGAAGTTCCTATGAATCCCCTTTCCGTTATTCGGCGGGTAAGAGATGATGTTTTCTTAGCTTTTCGGGGCCGACCTTTCAGAGGTTCGGTCAGTGCTCGTTCTGGTCGCTTAGTGAACCTTTTATCTATATCCTGCTCTCAGTCTTCTTATAGAGCGGGAATTGGATGATTGCCGACCCGGGGAGTGGTAGTTCTAACTTACTACTCTCCTCCCATTCCGTCTTCCCCTGATCCTCCCCCCTGTTTTCTAACTGTGTGACTATTGCTTTCAGGCTCTTGATTTTCTAGGGTGGTTCTTACCTCTTTGTTCCTCTTCTGTTTGGAGTTTGCTTTAAGGAACTCATTATCCTCTTCCTACTGTCGGTCTTACAGTTATGGTGGTGTTGACCGTTACTTCCGTTTATCTTGGAGGGACGGCGGATGAGCTTGCTTTTCTTTGATTTATGGTCCATCAACATCGTCGTCGGGCGGTGGTCTTGCCGGAGCTCGATTACGATGTTGGATGGACGGTGGTATCTGGAAGCTCATCGGGTGTGTTGTGTGGCTAGACTAGAGATTTTATGCCTCTGCTTCTCGTTAGTGCGTATTGGTTCCATTTTGGTTGTTTCATTTTATCCTATGTTGTGGGTTCTTGATGTTGGTTTTCTTTTTTGGAATTGTTTTGCTTACCTGTCAGCCATGTTGACAGCTTTTGGTTGAGTTTATTTATGATAAGCTATCTTTGAGTTAAAAAAAAAAAAAATATTTACAATATATATACCAATATATATACATTATAGATAGAAAATAATTTTATTGGCTTTAAAAGATAAAATTTACCAATTAAATATTTTTCAAAAAAGATTATTAAACCAATTTAAATACTTATTAATAAAGATTATCAAATTGTTGTTGCCCCAAATTCCGGATCATCACAAATACGGTCCAATTCATGTTGAAAAGTTAAAGACTACAGGCTTTATATATCAAATTTAATCCACTCCATCTTATTATGTCGTCAAACTTTGAATTTTATGACAACAACGAAATTTTCGTTTATTTTATTAGGTTGTGGCTATAAGGAGGCTTCATCCTATTGTTCCTCAAAGACTTCCAAGGTTTTACAAAGGAGTGACAATGTTAAGCAAGCTATCACTTGATAGCTTTAACCTTAACACAGTAGATTTGATTGGATACTGTATCAATGAGAATCAAAGATTTTTAGTGTATGAGTACATGGCAAATGGATCAGTTGAAGACCGTCTTTTGAGATGTTGCTCAGATATGAAGCCTCTTAGTCGGGGAACACGGATGGAAATAGCCACGGATGTGGCTAATGGATTATATTATTTGCATTTTGAACACAGACCCTCCGTTATACAGCGAAATTTGAAATGCTCGAATATTTTACTCGGCAAGAAGTACAGTGCGACATTATCGGATATCGGGTTGATGAATAAAAGAAATGGATGCTCTATGCGTGAATTTCCCAAGATAGGCACAACCATTCCTGAAGGACAGAAATATAGTGACTCAAATGGCAGATAA

Functional annotation

Database	accession number	e-value	annotation
nr	KAF3771835.1	4.1e-22	Serine/threonine-protein kinase
Swissprot	Q9FX99.1	2.6e-21	Probable receptor-like protein kinase At1g49730
trEMBL	A0A804KVR3	3.3e-21	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G20650.1	45.16	7e-25	109	ASG5	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g429492	AT1G20650.1	155	76	2	10	159	101	251	45.16	7e-25	109
g429492	AT1G76370.1	155	76	2	10	159	98	248	45.16	9e-25	109
g429492	AT1G07870.1	129	62	1	10	138	127	251	48.84	1e-23	105

Ortholog group

Species	Genes
Allium cepa	g247699.t1; g429492.t1
Allium fistulosum	AfisC1G02462; AfisC1G02463
Allium sativum	Asa2G04884.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	12	142	57.4	1.2e-15

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0008150	P	biological_process
GO:0009987	P	cellular process
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0023052	P	signaling
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:1901564	P	organonitrogen compound metabolic process
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K13430	PBS1; serine/threonine-protein kinase PBS1	EC:2.7.11.1	Plant-pathogen interaction	ko04626

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network