result

Gene information

Detail information of g431633

Location

Gene	Chr	Start	End	Strand
g431633	Scaffold_80447:HRSCAF_463533	178975	179814	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009418230.1	2.6e-72	PREDICTED: protein CUP-SHAPED COTYLEDON 3
Swissprot	Q9S851.1	2.1e-66	NAC domain-containing protein CUC3
trEMBL	A0A8K0HW35	1.3e-73	Protein CUP-SHAPED COTYLEDON 3

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76420.1	75.00	1e-65	245	ANAC031;CUC3;NAC368	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g431633	AT1G76420.1	160	36	3	13	170	3	160	75.00	1e-65	245
g431633	AT3G15170.1	158	42	3	25	172	15	170	65.82	1e-56	215
g431633	AT5G53950.1	145	41	2	26	170	13	155	70.34	2e-56	214

Ortholog group

Species	Genes
Allium cepa	g431633.t1; g535960.t1
Allium fistulosum	AfisC6G03893; AfisC6G05876
Allium sativum	Asa4G06489.1
Arabidopsis thaliana	AT1G76420.1; AT5G53950.1
Oryza sativa	LOC_Os08g40030.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	31	159	93.8	8e-27

Gene Ontology

Accession	Ontology	Name
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009653	P	anatomical structure morphogenesis
GO:0009888	P	tissue development
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0009933	P	meristem structural organization
GO:0010014	P	meristem initiation
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0048646	P	anatomical structure formation involved in morphogenesis
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0032502	P	developmental process
GO:0048507	P	meristem development
GO:0048532	P	anatomical structure arrangement
GO:0048856	P	anatomical structure development
GO:0048859	P	formation of anatomical boundary
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0090691
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network