result

Gene information

Detail information of g435375

Location

Gene	Chr	Start	End	Strand
g435375	CHR6	106960643	106964427	-

Sequences

CDS

Protein

Gene

>g435375.t1
ATGGAGCCTCTCTGTGATTTCTGTGGTGCACAAAGATCAATGATATATTGCAGATCAGATGATGCATCATTATGTTTATCGTGTGACCGAAATGTGCATTCAGCAAATGCTCTTTCAAAGCGCCATTCTCGAACACTTATATGTGAAAGATGCAATTCACAACCCGCTATAGTTAGATGCATAGAAGAAAACTCATCATTATGCCACAATTGTGATTGGACTGGTCATAGCAACTTGCCTACAGCTTCAGATCATAAGAGGCAGACGATAAACTGTTACTCGGGTTGCCCTTCTGCTGCGGAACTTTCTAGAATATGGTCTTTCGTTGCAGAGTTTCCTAGAATTGATGACTCGAATTGTGAACAAGGAAGAGAACTAATGAGCATTAGCGAGAATCATGTGAGTACATGTTGGGGAGCACCTGGTGGTAGTAGTACTGAAGAAGTAAGCATGCATCAGATGGATGAGACTGATAAATTTAATTCGGGAACTGGATCTTCTTCTAAGGCTGTAGGAATTGTCCGATCGAGCAGTGCGCATCCAGCTGGTTCGGAAGAGTCTGCAGCGCCTGAGGTGCACTTTATGATCTGACGAATCATTTTTTTCTTCCCTTTTTTTTATTTGTGTATATTCTATTATTAGGATTCGGAGCACCTACATTTGATAGTGACTAAGTAGAGTAACACCATGCATCACTTACCGTCTGATACATAATGTTTCAGGAATCGGGTAAATTACCGTAGAAGGGGACAAGAGACCTATTTTGGATTTCTTCCAAACTCAGTCTGTTTATATGGAATTGTGTGTACATAAATAACTATAAAAGAGCTTAGGATTTTAATTTTATGTACGTATTAAAAGATAAGCAACCACTATAGTGCACAGGTGCATGAATGAAGAATGCACATATTGATGATAGTCTTATATTAAATCATCATTAGTATAATGGATTCAATATGAACATTATGTTATCACTCTTCACATTTCACAGTCAAATTGGTTTTTTGTGATAATACACGGTTCTTTAGTATTGTATCAGTTCAAGGTTCAATTCATGCGGGCTTAATTGGAACATGTGCTTCATATCATTCAATGTTAATGAATACACGTTTGGTTCGAGATAATCCACATATGAGGGGATATGTTTAGAATAGTCACATATCAAACAATTAATCTAATGTATTACATGCATAATATTGATATCAATTCTACATGGTCAATTGGTTTTTTTGATAATATAGTGGTTCTCTACTAACCACTAAATGTGCAGTTGTAGAAGATGCAAATGCACTTGCATACACACACCATCATCATCTGTATGCTTCAAAAGTAGTATACATCGTCTTTTAATATTATTTTTGGTAATATGTTTATGTTTTGATGTATTATGATACATTCTACAAACTCTAAGAAACCGAATAATTGTGAATGTGTTACATGATGCAGTTATGTGGCTCTGAAACAAAAGATACTGAAATGTGTAAAGGAAGCTTCTTTGAAGATTTCACAACTGATGGTGGCAATCTAACATTTGAGAACTACCAAGAACTCTTTGGTGGCCCTGATAACCAGGCAGGGCAATTTTTTGATGATGCTGGATTCTGTAGCTTATTTGATAACAAGGAGATGTCAGATGCAAATTCTAATTCCCAAGGAGAATTTGTGGCCGAGGTATTATATTGCACCCATTTTCCAATTCTCTTCTGTTTTATGTCTAATGTAAGCAGTAGCATAACCAAGGATTACTAGTTCCCTCATTACCTAGGCTGTTAGTCAGAATCCTTCATGAAGCACTGAAGATCTATTGCTGGTGAACAACTTATAAGTTATAACTTAGTTTCAAAATTTGATAAGGACCAATGCTCAAGATATATTGAATATAGATCCACCCAGGACTGTAGGAAGGGAAATGAAAGAATAGTAATATTGTTCGGGTGATACCCGATATGCTGTGTAAATTTATGGGCCATAGGCCTTTGTTTCAAAAAAAAAAAAAGGGGGAAAGGAAAAAAGAAAAGAAAGAATACACTAGTTTGCAGAAACTAAACTAATAACATAAGTGGCTGGTCTATATATGAACTATTTTATTTTTCAAGATATGCAAGTACCCGGTGATATATATCACGTATGCTACGAATATATGATTCACATGTCCTGCTTCTTTACTTGAACACAAAAATGCTGCATATGTAGAAAGTCCCTATTGTTCAATATCGTTTTTAAAAGTATTAAAGCATGACATGGATCATCATGTGAAATACTTGATGGTATATATTTTCAAGAAATCTAGCTACAGTCACTTATAAAGCAACTGTCCATGCTTTGTTGTGGTTAGCTTATCAACACTGGGACCTGTTTTGGATTTAATTAAAAGAAGAAAAAAATTAATTGAATCAAATCTATGCACGAGTGCAGGCGACTGTACAAGAATTGCGAGTGTCCTTACTGTATCTCATGTATTTTTGCTTGTTGAATAATGTTTCAGTCATCAATAAGAAATATTATAGCACCATAAAGCAGCACTCACTCTTCCAAAAATAAGAAGTTACTTTAGCGGTATTTTATAACTTTAGACAATACTGCAACATCTGATGCATGCTACATAGATATTGATACATGTTATTGTGCACGGACTATAATTTATTTTGATTAAAATGTTACTCTTATTCCTCAGACATCAGCAAGAAATGTGATGTCGATGCAGCAAGAATGTAGCAATGGGGCATCTGCTGATTCCCTGAATAAAGCAGAGATTAGCGTCTCGTCTTTGCCTGCAATGCCAGCAAGATCAAACTTATCTCTTTCCTTTTCGAGTATGCCTGGAGGAATGGGTGAACCGCCTTGGTATAATAGTGGTGAATGTTCTTCATATCATGTAGGTAGCAGAGACAGTGCTGTTATGCGATATAAGGAGAAGAAGAAAGCTCGCAAGTATGTAAATGCACACATCATACTCATTATTTCACAGTTTCATGCTTTAGTGTTTATGTTATGTTTCAAGCAAAACAAGTAGAAACTGTAGAAATCGGGGTCTTTACATAAGAAAGAAAAAAAGTTAGTAATTCACTCTCATAACTTTACAGTGAACTCTTTTAGACAACTGTTATAAATATACGGCTTACCATGCAAAACAACATAAATACACTATGATCTTCGCATATTGGGGGTAAAAAGCTTGGTTATGTAAAATGAAATTGGCTGCGATATTGTCATATATATGCTTAGTATTGAATTAGATTATCTTGACTTTGTAATTAATTGCATGACACTAAAGAAAAAATTGGTGAAGGAAGAAGTCAGATTGTACCGCATGTAATATAGAGAATAGCACGATGGAAGCTCTAAAATACCTTACATTTGCATAGATTTAGTTAAACCAGCTTATTGTTAACATTGCTTGTGAACTGAAGCTGAAGAATAACCAACCTATTCATATTGTACTTGGCAAACCAATCTTCTACTTTATTGAACCCTGAATTTATTTTTCATTCAACAGGTTTGATAAAAAAATAAGGTACGCCTCACGTAAAGCAAGGGCAGATGTGAGAAGGCGTGTAAAAGGAAGATTTGTTAAAGCAGGCGAGGCATATGATTACGATCCATTATGCCAAACCCGAAGTTACTAGAGCCATAAGTTGGTATCTTCTAGACACATCAAATCAAATATTGCCTGGACCACAAACAAGAAGTCTGACCTTGAACTTCTTTCTGGGTTGAAATTGTGCAACGAAAGGGAAAAAAAAGAGATGGTGCTTATCACATCGTGCGCTGATCATCTTGAATAG

Functional annotation

Database	accession number	e-value	annotation
nr	APL97765.1	6.4e-181	COL1
Swissprot	Q9LUA9.1	9.7e-49	Zinc finger protein CONSTANS-LIKE 10
trEMBL	A0A1L5BWP4	4.6e-181	COL1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G48250.1	45.89	3e-79	292	BBX8	B-box type zinc finger protein with CCT domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g435375	AT5G48250.1	401	146	12	1	376	1	355	45.89	3e-79	292
g435375	AT3G07650.4	405	148	9	1	376	1	354	43.70	4e-76	282
g435375	AT3G07650.3	405	148	9	1	376	1	354	43.70	4e-76	282

Ortholog group

Species	Genes
Allium cepa	g435375.t1; g468242.t1
Allium fistulosum	AfisC6G04046; AfisC7G01252
Allium sativum	Asa3G03846.1; Asa8G03016.1
Arabidopsis thaliana	AT3G07650.1; AT3G07650.2; AT3G07650.3; AT3G07650.4; AT5G48250.1
Oryza sativa	LOC_Os02g49230.1; LOC_Os02g49230.2; LOC_Os02g49230.3; LOC_Os02g49230.4; LOC_Os02g49230.5; LOC_Os02g49230.6; LOC_Os06g19444.1; LOC_Os06g19444.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	337	377	55.3	4.6e-15

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0016020	C	membrane
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0044424	C	intracellular part
GO:0044464	C	cell part
GO:0048511	P	rhythmic process
GO:0048519	P	negative regulation of biological process
GO:0048579	P	negative regulation of long-day photoperiodism, flowering
GO:0048580	P	regulation of post-embryonic development
GO:0048581	P	negative regulation of post-embryonic development
GO:0048583	P	regulation of response to stimulus
GO:0048585	P	negative regulation of response to stimulus
GO:0048586	P	regulation of long-day photoperiodism, flowering
GO:0050789	P	regulation of biological process
GO:0050793	P	regulation of developmental process
GO:0050794	P	regulation of cellular process
GO:0051093	P	negative regulation of developmental process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051239	P	regulation of multicellular organismal process
GO:0051241	P	negative regulation of multicellular organismal process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0071944	C	cell periphery
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000026	P	regulation of multicellular organismal development
GO:2000028	P	regulation of photoperiodism, flowering
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2000241	P	regulation of reproductive process
GO:2000242	P	negative regulation of reproductive process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network