result

Gene information

Detail information of g435587

Location

Gene	Chr	Start	End	Strand
g435587	Scaffold_80813:HRSCAF_463899	444948	448799	-

Sequences

CDS

>g435587.t1
ATGATGCAAATAAGGAAAAGGATTAGGGCTCAGATTTACGCATGCAAAGGTGTGGGGGCAGAAGCAAAGGCTGGTAAGCTCCACGCCAAAGGAAGAATGGCCCACAGGGGAATGCTTATTCATGGACACTGGAATACAACTCCCGTCACTTCATTCTCTCCCTTTCATACTTTACTTTTTTCTCGATCAACTACTTCCTATTTACTTCCTATTTTCATAATTAATATTGAGCTATTGAATTTCTGTATTAGCATGATGGAGATCACAACTGTGGAACATCATCAGGCCATGGACACTCATGCATTGGAAGATGAATCTCTGATGTGCCCTAAATCGATGCAACTGATGTCAGAGAACAAGAAACCAAGGCCTGAACCGGAACAAGCTCCAAAATGCCCTAGATGCGATTCAACCAACACAAAATTTTGCTACTACAACAATTACAGTCTTTCTCAGCCTAGATACTTCTGCAAGGGTTGCAAAAGGTACTGGACAAAAGGAGGCTCCCTTAGGAATGTTCCGGTAGGTGGTGGAAGTCGAAAAAATAACAAAAGATCAACCCTACCATCAAACTCCTCTTCTCTATCAAAGAAATTGCAAGATCAACATATTGCATTAACAAACAACAATCCAAATCCATTTGCCAATCTCAATCTCCCTTCGCTTCAGTTACCACCTATCTCTTTCGATCCAAGCGACTTAACTCTAGCCTTTGCAAGCATCCATAACCATAACACTAGTACTGTTGATCAAAACAATACCAATAACAATAGCACTTTCATGCTTGGAAATGCTACCAATACTCATACCAACAATGCAACCATGGGTTTTCTTGACATTCTAAGAAGTGGGAGTACATTTGTAGACCACAATGCTACTAATGGTTCATACGATCAAAGCATGTGTTATGGTAACTATGGTCGCAATGTCGATGAAGATGGTAATTCTATGATGTTCAGTTTCGGTGGAGGGCTATTGAATAGTAGTACTACAAATGAAGGAGCGATCACAACAAATGGTAATAATGCAAAAGAGTTGATGGATGATGTCAATGTTAAAATGGAAGAAGAGAGCAAGGTCAGTTATGAATGGCCAAATATAAGTGATCATGGTGTTGATTCTGCTACAAGAGACTACTGGAGCAATGGCGTTAATGTTAAAGAAGAACTGGTTAAGTGCCAGCCAAGCTATACTCCATCAATAAAACAAAAGTTTTGA

Protein

Gene

>g435587.t1
ATGATGCAAATAAGGAAAAGGATTAGGGCTCAGATTTACGCATGCAAAGGTGTGGGGGCAGAAGCAAAGGCTGGTAAGCTCCACGCCAAAGGAAGAATGGCCCACAGGGGAATGCTTATTCATGTTTCCACATGAATAACCATGATGATTTTATTTTCAGTTTCTTTGAATGCTTTCTTTTATTTGGTTTTATTTATCAGCTTTTCTCCGCTTGCAAGCCACACAACGTATAAAACGCATTTGATGGTTTTGTACGTCCAACCCAACCATTTTATGCTGCCATGGTTCAGTGGATTGAATTTTCAATCTGCATCTCATTTCCTAACATAATTAATGACCTAAATGTAGTACTCACTAATTACTTTCTTAACCCACTGATTCCTTTAAATTTCTCATTTTTATAGGAAATATTTTTTAATATATGATTATTGGACGTATTAATGGTCACTAAAACAAAAGGTTAATGGTCACACAAATAAAAATTACACATATTAATTCATATGTATACCCACAAATGTAATTTAAATAATTACATGGGATATTATTTGTTCTGAATATATAAGCCAGCTGCGAGTTTTACTAATCTATATTCGTTTTTTATATGAATGTTTGATTTATTGATAACGAGGAGGCAAAGACCATATACAAGTTGCCGACTTTAGATTCCGCATAGACTAGAAGAAGCCTTATGCACTGAATGATGATTTAAAGTTGGCTACTCACGTAATAAAACACATATTTTAACAATACTTTTCTTTGTACCTAAAAACAACTTCAGTGGATGTAATTTAACATTTGTTCACATTAAAAATGATTACGATTTCATGTTTTGTACAAGAAACCTAAATTATCTGGACAAACAACTTAAATAACATAGGACATGGCGAAGTCCAATAACAACGATGATGAATTTCTTGGCTGATTATTGGAGCACTTTCGGAAACAATTAGCGTATACTTTTCATGATTTGATGGACAGCATCAGACTTACTTGGTTATTAAGAAATTAATCTTTGCCGTTAAAAAAAAAAATACTACACCAAACTGTGTGTAGAAGTGTCAGCAAATTAAGCAGCATTCCTATTGAAGATTTTATCTCTTGTCCTTCTCTTCAGTTATTTATTTATATTTATTTATATATTTAGGGACACTGGAATACAACTCCCGTCACTTCATTCTCTCCCTTTCATACTTTACTTTTTTCTCGATCAACTACTTCCTATTTACTTCCTATTTTCATAATTAATATTGAGCTATTGAATTTCTGTATTAGCATGATGGAGATCACAACTGTGGAACATCATCAGGTATGCATTCAGATGTAATTTCTTGATTTTATAATTTCTAATCTACATCTATACTTTTGATTCTTGTTTTTCAGAGTTTAAATTGTGTTTACACACATCATACTATCTATGGTATTGTGCCATACTATATTTACAAATATAATTAGTTCATCCTTTTTATATTTTGCAGCTCTTCATTGTAAGTAGATAATCTGAATATGATTTTCTTTCCTTTCTTTCTCATATAGAAGTTAGCTTTTCAGGTTTGTATTAGTTCGGCTTTTTGTGCACTCTTAACATAGTGAATATATAGCTTTTCCTAAGTAATGGATCGAAATCTTTGTTATAAAGCTTATAAAATGTGAAAAAAATTAATTTCTATGATTTTCAAGTAACTATCCTCGTATTACCCTAATTTGAAAATTCATTATCCCATATAGATTTTGAAAGGTTAATTTTTCGTCATGAATTTGATGTTTGTTGTTGTATAAAATCTAATATAATCACAGTTCCCTTCAGTTATTTCATCTACTTAAGTTTTGTTTGAGTTCAAACACTAAAAAGATTGAAGAAAGAGGCGGTGGGGATTGTATCTAGCTAAGTAGTCAATATACTTTGATCATATATAGTAACTAAATACTCTACAATTTGCCTGTCTAAATAAAATTAAAATTAACAAGCATTTTACAGTTTCAGGGTCTTATAATTCTGCAAATGTTGATAGCTTTAACATTTAGACATTTGAGATTTATTAATTTGATTATCCCCTACATATCTGACTAAAGTAATTGCTTTATCTTCTTTCTTTTCTCTCATATGCATAGTAATCCAATGTTGAAGATAGATGTTGGTCGTCGATGAAAGAAAAAAGAAAAAAACAAGTCAAAGTTATTGGGTCCGCAATGCCGGCTAAATTTTGAGAAACCACACTGAACATAAATTAAAAAACATATATAATTGGTTCCATTGCTTAATTACACAGGCCATGGACACTCATGCATTGGAAGATGAATCTCTGATGTGCCCTAAATCGATGCAACTGATGTCAGAGAACAAGAAACCAAGGCCTGAACCGGAACAAGCTCCAAAATGCCCTAGATGCGATTCAACCAACACAAAATTTTGCTACTACAACAATTACAGTCTTTCTCAGCCTAGATACTTCTGCAAGGGTTGCAAAAGGTAATCTAATATATGCACTCTCTTTCCACTAATACTTCACCCTATTTGTAGTCCCTCATCATAAATGTTTGTAAAAGAGAGAGCTTTAGTGGTTGGCACTTGGCATCATAATATAAGTTACACAATTCTTGATTTATGTAGAAATATCCTTCAAGGTTTGTTCTATGAATGTTCATTTCAACATGTTCACTTCTTGATGAACGTCATCGAAACTATATCTCTGTTCTTTCTTCCTAGGTACTGGACAAAAGGAGGCTCCCTTAGGAATGTTCCGGTAGGTGGTGGAAGTCGAAAAAATAACAAAAGATCAACCCTACCATCAAACTCCTCTTCTCTATCAAAGAAATTGCAAGATCAACATATTGCATTAACAAACAACAATCCAAATCCATTTGCCAATCTCAATCTCCCTTCGCTTCAGTTACCACCTATCTCTTTCGATCCAAGCGACTTAACTCTAGCCTTTGCAAGCATCCATAACCATAACACTAGTACTGTTGATCAAAACAATACCAATAACAATAGCACTTTCATGCTTGGAAATGCTACCAATACTCATACCAACAATGCAACCATGGGTTTTCTTGACATTCTAAGAAGTGGGAGTACATTTGTAGACCACAATGCTACTAATGGTTCATACGATCAAAGCATGTGTTATGGTAACTATGGTCGCAATGTCGATGAAGATGGTAATTCTATGATGTTCAGTTTCGGTGGAGGGCTATTGAATAGTAGTACTACAAATGAAGGAGCGATCACAACAAATGGTAATAATGCAAAAGAGTTGATGGATGATGTCAATGTTAAAATGGAAGAAGAGAGCAAGGTCAGTTATGAATGGCCAAATATAAGTGATCATGGTGTTGATTCTGCTACAAGAGACTACTGGAGCAATGGCGTTAATGGTGGTACTTCTTGGCATGGACTTATTAATAGCTCTCTTATGTAACTTAACTCTGCCCTTATATGTACTGGTATAGTTAAATATCTGCATGTTAGTTTTTTTACATTGCATAGTAGAGAAGCTTGAATTGCCGTTTGTGGTACAGTAGAAAATTCTAGCTTCTGTTCTAAGGTCTTTGTGTTAAATGCGTTTATTGTTTATTTTGGTGGGGGAAACAGTTTTTATTTTTATTTATATTTTCATAGCTTGGTGAACTTGTTTAACTTGTAACCGATTTATGTTATTTCATTTTGTGATTGGTTTTTGGTAATTCGGCGTTTTTTTTTTGTTTTTTTTTTTAACTAACAGTTAAAGAAGAACTGGTTAAGTGCCAGCCAAGCTATACTCCATCAATAAAACAAAAGGTATAGAATAATCTTTACTTGCCAACTTGTAAATTCACATGGGGTATAACTTTATTTCTTTTTCACAGTTTTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008789033.1	3.0e-47	dof zinc finger protein DOF3.2-like isoform X1
Swissprot	O82155.1	1.4e-25	Dof zinc finger protein DOF1.7
trEMBL	A0A8B7C0E3	2.2e-47	dof zinc finger protein DOF3.2-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G24060.1	80.00	2e-29	127		Dof-type zinc finger DNA-binding family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g435587	AT4G24060.1	65	13	0	120	184	43	107	80.00	2e-29	127
g435587	AT1G51700.1	93	26	3	115	205	16	103	64.52	3e-28	122
g435587	AT5G60200.1	81	15	2	115	187	32	111	70.37	5e-28	122

Ortholog group

Species	Genes
Allium cepa	g435587.t1; g435588.t1
Allium fistulosum	AfisC8G02070
Allium sativum	Asa1G03131.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02701.12	zf-Dof	Family	128	184	111.2	1.7e-32

Gene Ontology

Accession	Ontology	Name
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0003674	F	molecular_function
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005623	C	cell
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008150	P	biological_process
GO:0009889	P	regulation of biosynthetic process
GO:0010468	P	regulation of gene expression
GO:0010556	P	regulation of macromolecule biosynthetic process
GO:0019219	P	regulation of nucleobase-containing compound metabolic process
GO:0019222	P	regulation of metabolic process
GO:0031323	P	regulation of cellular metabolic process
GO:0031326	P	regulation of cellular biosynthetic process
GO:0031974	C	membrane-enclosed lumen
GO:0031981	C	nuclear lumen
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043228	C	non-membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043232	C	intracellular non-membrane-bounded organelle
GO:0043233	C	organelle lumen
GO:0044422	C	organelle part
GO:0044424	C	intracellular part
GO:0044428	C	nuclear part
GO:0044446	C	intracellular organelle part
GO:0044464	C	cell part
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051252	P	regulation of RNA metabolic process
GO:0060255	P	regulation of macromolecule metabolic process
GO:0065007	P	biological regulation
GO:0070013	C	intracellular organelle lumen
GO:0080090	P	regulation of primary metabolic process
GO:1903506	P	regulation of nucleic acid-templated transcription
GO:2000112	P	regulation of cellular macromolecule biosynthetic process
GO:2001141	P	regulation of RNA biosynthetic process
GO:0140110

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network