result

Gene information

Detail information of g43762

Location

Gene	Chr	Start	End	Strand
g43762	Scaffold_26494:HRSCAF_234997	579739	589249	-

Sequences

CDS

Protein

Gene

>g43762.t1
ATGCTCGCTCTTTATCCAAACCCCGTTCCATTTCTTTCTCCTGTCAGTTTTTCAAACAACTGCAACAATATTCATCGGCGTTTAAAATTGCTCAATGTCGCCAGCGTTTCATCGCCGCATTCAGGCCCTAGGATTCTCAAATCCAACCGAAGAAGAAACCCTAAAATGGCCACTTTATCATCCTACGACGACGAAGATTCTGATGATGAATTCGAAAATGAAGAGGAGGATGATGATGGTACGGATGAGAGTAATGGAGATTATTCTCGACTATCTGACAATGTAAGCTTTTCATTACAGCTCTTTTTATTCATGGCAGAATTTTTAGTTGATAAGATGGTTGTTCTTAGTACTTAGGCAAAAGCTGAATTTTGAGATATATCGTCATTATGCAACACGGAAGTAAAAAGGTACTTATTTGGTTCGAGGGTTTGAAACTTGAGAGTTAAGATACAGCACTAAAGAATATTCTTTATCTTTCCGTTAGTAACATTGAGAACATTCGAGATAGCTATATTCTAATTACTAGCTACTTATATTAGTCAAAGACTACAGATTATCATTTGTAATGCCAAGTAGCTACCTTTAACTGTGAAGCAAGTCTCTTCTCACTTTTGCTTCTGCTATATATCATTAGTTTGCTTAAGGCCTGTTACTTCCTTTCAATACCATTATTGTGGCATGCAGGATGATTATTTAGACTTGGAAAAGGCTTGTAGCAGGAAAAACTCGATGGGAAAACAAGCAACTCTTCATTCCAGGATTACAAATAAGCGACATCGTAAGATTTAACCAACAATATACCTAAAAATCTTACATTAAATTACATTTAATTGTGTTCTGTTCAAGTACAGAAAATCTAGAGTCATCACAGAAGGACCAAAAAATTAGAACACTGGAAACAAACATTAAGTTCGATACAGGAGAACAGGTACGGTTTAAAACTACATAGAATATTGTTATTACCCTATGTGGATGCTAAATAGCTCTGTCAAAAAATAATTAAAGAACTCTGTTGGTTGCAAGTGAAGAACGGAGCATTAACAGGAAGCGCACTCAGAAAACTCGCTGAAGAACTTGATTTTGATGAAAAATGGTTCCCTTTAATCAAGTACCTAAGTACATTTGGACTTAAGGAGTCTCATTTCACTTCCATTTATGAACGTCATATGCCTTCCTTCCAAATTAACTTGACTTCTGCTCAAGAAAGAATAGAGTTTCTACTGAGTGTTGGTGTAAAGCGTGCAGATATAAAGAGGGTACTTGTGAGGCAACCACAGATTTTAGAATATACCGTCGAAAATAATCTGATGTCTCATGTTATATTCTTGTTGGGCCTAGGGATTCCAGAAACTCGAATAGGACAGATAATTAGTGCTGCACCTTCTTTATTTTCATACAGTGTGGAGAACTCTCTAAAACCCACTGTTCGATATTTGATTGAAGAAGTAGGTATTAAAAAGAGTGATGTTAGCAAAGTCGTGCAACTTAGCCCCCAAATTCTGGTACAGCGAATTGACAATTCATGGACTTCTCGCTTAACATTCTTATCAAATGAACTGGGGGCACCACGGGAGAATATAGTGAAGATGGTCACTAAACATCCTCAGCTTCTTCACTATAGTATAGAAGATGGAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTGGAAGAAGAAGAGGAGTGAAATCAGAGAAAATATGAATATAAAATTCGTTGAAAACTGCCCTATTTATAGTAGAACAACAACAGCCATGTCCATTCGTGAAAGGATATGACGAATAGACACTTCTTTTGAAATTCAAATTTTGAAATAACTGACCATGTCGACATGGGGTACTTGAGTATGTCGACATCCCAAAGGATTTTTAATTTTTTTTTTTTAAAAATAAAATATATTAATATTTTGGTATATATAAAATTTTACTATAATTTTATATTTAAATCTAAGTATAAATATTAAAAGTTAAATATATTATTATTAAAAGATAGTTTAAAACTAATTTGATTTTGAAAATAAAGATTATTTTGAGGCTAAAAGTATTTAAAACCAGGATAGATGTTTTTGATTCTTTTAAAAGGAAGGTTTTGAAATCATTTTGAAAACAAGATATAATTTTGTAAAAACATTTTGAATAAAAGTTAGCGGATACAAAACAATGTTCCACTAGATTTTTCGTAGGTTCCATCCTACTTAGGGTTCCATCCCTTTAACAGGCTCGAAGTGGATTCCATTCCACGAATAAATTGGATTTTAAGATGCCAGTGCTTTTCTAGGAGTTTTAACAAAATTCCTAATTAAATTACTTATTATTGAAATCTTGAACTCTTGATAATCTTGATACTCATGAGTCTTCAATCTTGATATCTTGAATCTTCATTCCTGCATGGTTAAATCCTGCATATACATATATATCTAAACTTATAATGTTAGTATTTATATTTTATAATCTTATTCTAAGGTTGTTGTCATCAAAACCATCATCTCAAGGACTAACAATCTCCCCCTTTTTGATGATGACAACCTTTGTTTATAAAATATTACTTCTATCCTAATAACTCCCCTAAAACTAATAACTCCCCCTTAATCTATGCCTAACTATCCTATTTTATACTTCTCCCCCTTTGTCATCAACAAAAAAAAACTAACTCCAAACTATATAACTCCCCCTTAATCTAATACTCTATGACATGTGATTATAATGATAGTGTTATCATAAATAATCAACACTTAATTCTAAAACTAAAACTTAGTCCTAAACTACTAACTATCCTAACTAAGAATCTATATGATAATACTTATAATAGTGAGAAATCAAATATAAGAACACAAATTATTTATTAATTATATATTGTTATATTTACATTTTCGTAGAGAACGTAAGAAAAACATACAACAATAGGAAAGAGAGAAAAGAAACTAATGTGTGTCTTTGAAAATGGGAGATCTATGAACCGAACAATTTGGATAGTGGAAACAGAAATTTCCACGTTGTTCGACAAGATTTCCATCCTTGTCAAAGCACACTTCGCCAACGCAAACGACTTTGTCGTCATCATCTTCAGCGTGCTCTTCTTCCATGAAGGCTTCTTCTTCTTCTTCTTCCTCGCTGTCCTCTTGCACTTGATCTCCTGAAGAGTCTTCATCAATCAAGATCGGATTAGCGTGATTGTCCATTAGAAATTTTTGCAAATTTCTAAGGATTTTGCCTTGCCTTCTTGTTCTTTGGCCATTCTAAAGTTGCACTACTTGAATTTCAGTCATTAGTTGCAGTGCATCCTTCAAAGAATCCTCCATTTTCATCACTCGAGCGAGCGTAGTTCGTTGAAATGGTCCAGAAGAAGGAGAAGGGAACGAAAAGGTTGAATTTTTGTTTGATTTGGAAGAGGAGGCCATTGTTTAATTTGATTTCAGAAGTTAGAACAGAGAGAGAACAGAAAGAATGATCAAAAATTTCGAAAATAAGAAGAATATATAACCACTTATTTGAATTTTGGTGGGAAAAATTTCAAAAATAAAAAATCGTTATATGTCGACATGGGTATAGGGGGGATGTCGACATGGTGCTTGATATTTTTTTACTATTTGATTTATTTTGATTTAATTTTTAATTATACTTTGTTATTTATATTTTATATTTCAGTTATTGAACAAATACCTAATTCTCTTCTTAATTTAGTAAATATAGATTCATTTAAGGGTTTTGTTAAGATATATCAGCAATTTGATTCTCAGAATTGATATAATCGAGAGTAATTACTTCCTTACTTATATTATCTCTGAGAAAATGATGTCTGATATCAATATGTTTAGTTCGAGCATGATGAGTAGTATTTTTGGATAAATTTATTGCACTAGTATTATCACAATAAATTGGTGATTTTGAGATATTTAAACCAAAATCTTTTAAAGTTTGTTGCATATATATTACTTGAGAACAAGCCAAAGCAGCAGAAATATACTCTGCTTCAGTTGTTGATAAAGAAACTGTGTTTTGCTTTTTACTAAACCAGGAAATCAGAGAATGCCCCAAAAAGTGACAAGTTCCACTTGTACTTTTTCGGTCTGATTTACAACCAGCATAATCAGCATCACAGTAAGATATTAAGTCAAAAGAATCATTTTTAGGGTAAAATAAGCCATAATCAGATGTGTTTAACATATCTTATGATACGTTTTACGGCTTTTAAGTGGGTCTCTTTAGGTTGGGATTGATATCTTGCACAGAGACAAACACTATGCATGATATCAGGTCTACTAGCAGTGATATATAGAGTAGTGATCCAATCATTCCTCTATATAATTTTTGATCTACATCTTTCGAGAGATCTTCTTTACTTAGGTACTCATTGGTTGCCATGGGAGTGGGTTTTCCACTTGCAGTAGTCAAACCAAATTTACTAACTAGGTCTTTAGCATATTTTTCTTGACTAATAAAGATACCATTATCTAATTGTTTTATTTGTAATCCTAGAAAGAAGTTTAATTCACCCATATGACTCATCTCAAACTCTTTTGTCATTATTTCAGAAAATTCTTTATTCATTTCAAAATTAGTTGATCCAAAAATGATATCATCTACGTAAACTTGTACTAGTTGAATATCATTTTTATTTCTTTTAATAAAAAGAGTATTATCTACTTTACCAATTTCAAAATTTGATTGTAATAAGTAAGATCTTAGTCTATCATACCAGGCTCTAGGAGCTTGTTTTAGACCATATAGAGCTTTCTTAAGTTTGTAAACATGATTTGGTAATTTTTCATTTTCAAAAAGTGGTGGTTGTTCAACATATACTTCCTCTTTTACAAATCCATTTAAAAAGGCACTTTTAACATCCATTTGAAATAATTTGAAATTATTATGATTTGCGAAAGCAAGTAGAATCCTAATGGCTTCTAATCTTGCTACGGGAGCAAAGGTTTCATCAAAATCTATTCCTTCTTCTTGACAATAACCTTGAGCGACTAACCGGGCTTTATTTCTAACAACCTCTCCTTGTTCATTCATTTTATTTTTATAAACCCATTTAGTTCCAATTATAGTTTTATTTTCAGGTCTAGGAACAAGTTCCCAAACATCATTTCTAGTGAAATTGATTTAGTTCTTCTTGCATAGCCAAAATCCATGAATCATCAGTTGATGCTTCTTTTGGATTTTTGGGTTCAATAGTTGATATAAAAGGCTACATTACTCATTTGACTTAGTTGATTTCTAGTTTTAACAACAGATTGCATATCTCCTAGTATATTTTCTATAGGATGATCTTTTAAAAGTTTAATTCCTTTTATTAGGATGATTAATTTCATTATTAGTTTCAGTTGACTCTTGATTTTGAGTGATTAAATCCTCTTCATCATTTGTATCTTCAAAAATTTTGAGATTTTCATCGAATGAAACATGCATTGTTTCTTCGATGGTGTTAGTTCTTAAATTAAACACTCTGTATGCTTTACTTCTATTAGAATATCCGATAAAGATACCTTTGTCGGATTTAGGATCAAATTTATCTAAGTTATCTTTTGTATTTAAAATAAAACATTTACTTCCAAAAATTCTAAAATAAGATACCTTAGGTTTCTTTGAGTGAAGAAGTTCATAAGATGTCTTATCAGTTAAAGGTCTAATTAAAATTCTATTTAAAATATAACAGGCGGTAGCAACTGCTTCTGCCCAAAAATACTTTGGTAATTTACTATCTGAAAGCATAGTTCTCGCACACTCTTGAATCGTCCTATTTTTACGTTCTACTACTCCGTTTTGTTGTGGAGTTCTTGAAAATGAAAAATTGTGAGTTATTCCCTTTTTATTGCAGAATTCCTCAAACTTTTCATTTTCAAATTCACCACCGTGATCACTACGAATGGTTATAATTTTTAGAGAAAGTTGATTTTGAATCCTTTTTTGTAAAGTTCTTAAAACATTCAAAAGTATCACTTTTATGTTTCAAAAATATTGTCCATGTAAATCTAGAATAATCATCTACAATTACAAAAACATATTTACTATGATTTATTGACAGAATTTGAGATGGACCAAATAAATCAAGGTGAAGTAATTCAAGAGGTTTTGAAGTTGAAATCATATCTTTTAATTTAAAGGAACTTTTTCTAAGTTTTCCTAATTGACATGCATCACATAAACTATCTACTTTAAAATTCATTTTAGGGAGACCTCTTACTAGATCATGTTTTGACAGTCTAGATAAGAGTTTGAAATTCAAATGCCCAAATCTCTTATGCCAAATCCAAGGGTCACTTGTATTTGCCAAAAGACACAAGTTATCATTTGAAACTTTCATACTAAGAATATAAATATTCTTTTTCCTAATTCCCTCAAATATTATGGTTGAATTATTATCTTCAATGTGACACTTTATCTTTTTCAAATTTAATTTTATATCCTTTATCGCAAAGTTGACTTATACTTAGCAGATTATGTTTCAGATTCTTAACTAGCAAAACATTAGTAATAATAGGAGTTTCAGAGTTACCGACTTTGCCGATGCCAATCACATATCCTTTTGAATTGTCTCCAAAGTTAACCAGTCCTCCGTCTTTGTATATTATATCATTCAGCATATCTGGATTGCCAGTCATGTGTCTAGAACATCCACTATCGAGTATCCATTTATTCTTTTTGATCTGCACAATTTGTCCATTGTGGATTGATTCCTCAACACCCATAAAGCATGTTTCCTGCACATCAAACAATTTTGGTAGACAACTTGAATTTGAATATTGATTATATGCAGACTCAAGAGACAATGATGATCTGAATATTTCTAAACTAGTATTAACAAGTTTTTAAACATAGCCATTTTAAAAACTTTTTCAAAAATCAGATTATGAAACTTTGAAAACCTTGCTCTGATACCAAATGTGAGAAATGCGGATTACGGATCTTAAGGCTAGGATTAACACTAGAGGGGGGTGAATAGTGTTTTAAAGAATTACTAAATCTTTTTGAGTTTTTTGTTAATTTGAACACAAATGTATGCAATATTCAGACACAGATATGATCACAGAATCAAACACAGATGCAGAAATAAAGTAAAAGCAATAAAGGAAAGAACACACCGGATTTTATACTGGTTCGGAGTTACCCTACATCCAGTCCCGCACACAAGTACGGATTTCCTTTCAAAAGCAATTGTACAATTACACCCTCGATTTCAAGGCCACGAGGTACACCACTCCAGATTCACAATCCTCTGGGTAGAGATACTTGATTTCCGGGCAACAAGTTCACCCAATTGATTTCCAAGGCTACAATCACACCTTTTCTCACTTGATTGATTTCACAGGCTACAATCACACCTTTTCTCGCTTAGTTTATTACAAAGAAGCCTATAACTCTGAATAGCACTGAGATCTTGTTGAGATAGTGATAGAGAATCAAACCAGAGATGATCTAGTTAGATTCAATGTTGATTTCGGCAGAGTAATGGTAAAAATATGTATAAAGAAATGTGGAAGAAGAAGAGGAGTGAAATCAGAAAAAATATGAATAAAATTCGTTGAAAACTGCCCCTATTTATAGTAGAACAACAGCCATGTCCATTCGTGAAAGGATATGACGAATAGACACTTCTTTTGAAATTCAAATTTTTGAAATAAACTGCTACCATGTCGACATGGGGTACTTGAGGATGTCGACATGCCTAAGGTATTTTTGGTAATTTTCTTTTCTTTGAAAATAACTTCTATCTTGTATTAAAACTATTTTAAACTTTATAAATATACTTAACTATAGTTAAAATACATAAGTAAATATAGAGAATAATATTTTGGTATATATATATATATAATTTTACTATAATTTTATATTTAAATCTAAGTATAAATATTATTATTAAAAGATAGTTTAAAACCAAGGATAATTTGATTTTGAAAATAAAGATTATTTTGAGGCTAAAAATATTTAAAACCAGGATAGATGTTTTTGATTCTTTTAAAAGGAAGGTTTTGAAATCATTTTGAAAACAAGATATAATTTTGTAAAAAACATTTGAATAAAAGTTAGTGGATACAAAACAATGTTCCACTAGATTTTTCGTAGGTTCCATCCTACTTAGGGTTCCATCCCTTTAACAGGCTCGAAGTGGATTCCATTCCACGAATAAATTGGATTTTAAGATGCCAGTGCTTTTCTAGGAGTTTTAACAAAATTCCTAATTAAATTACTTATTATTGAAATCTTGAACTCTTGATATTCTTGATACTCATGAGTCTTCAATCTTGATATCTTGAATCTCTATACTGTACAGTCTTCATTCTTGGTACCTACATGGTTAGATATTGCATATACATATATATATCTAAACTACAATGTTAGTATTTATATTTTATAATCTTATTCTAAGGTTGTTGTCATCAAAACCATCATCTCAAGGACTAACATTTGTGACATAACAAAAGGGGCTATAGGGAACCACCCTATGGGTCACCTAACCTAAACCATGTGATGCGCACCACAAAATTGATATCTAATACATCATCATGGATCAGGGGCACGACCTCAAGATTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241704.1	4.4e-34	transcription termination factor MTERF9, chloroplastic
Swissprot	Q9FM80.1	1.2e-28	Protein TWIRT1
trEMBL	A0A804IIB4	2.0e-33	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G55580.1	73.26	4e-81	298		Mitochondrial transcription termination factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g43762	AT5G55580.1	187	50	0	162	348	173	359	73.26	4e-81	298
g43762	AT5G55580.1	74	55	0	218	291	339	412	25.68	9e-06	48.1
g43762	AT4G38160.2	185	125	4	167	346	72	252	27.57	3e-15	79.7

Ortholog group

Species	Genes
Allium cepa	g43762.t1; g440412.t1
Allium fistulosum	AfisC1G08158
Allium sativum	Asa7G01153.1; Asa7G01154.1; Asa7G06652.1; Asa7G06653.1
Arabidopsis thaliana	AT5G55580.1
Oryza sativa	LOC_Os07g39430.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02536.11	mTERF	Family	177	251	29.8	2.5e-07
PF02536.11	mTERF	Family	250	349	54.0	1.1e-14

Gene Ontology

Accession	Ontology	Name
GO:0042254	P	ribosome biogenesis
GO:0005622	C	intracellular
GO:0005575	C	cellular_component
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003727	F	single-stranded RNA binding
GO:0005488	F	binding
GO:0005623	C	cell
GO:0005737	C	cytoplasm
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006396	P	RNA processing
GO:0006725	P	cellular aromatic compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0006950	P	response to stress
GO:0006970	P	response to osmotic stress
GO:0006996	P	organelle organization
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0008380	P	RNA splicing
GO:0009507	C	chloroplast
GO:0009536	C	plastid
GO:0009628	P	response to abiotic stimulus
GO:0009651	P	response to salt stress
GO:0009657	P	plastid organization
GO:0009658	P	chloroplast organization
GO:0009987	P	cellular process
GO:0010467	P	gene expression
GO:0022607	P	cellular component assembly
GO:0016043	P	cellular component organization
GO:0016070	P	RNA metabolic process
GO:0019843	F	rRNA binding
GO:0022613	P	ribonucleoprotein complex biogenesis
GO:0022618	P	ribonucleoprotein complex assembly
GO:0022622	P	root system development
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0034622	P	cellular macromolecular complex assembly
GO:0034641	P	cellular nitrogen compound metabolic process
GO:0042255	P	ribosome assembly
GO:0043170	P	macromolecule metabolic process
GO:0043226	C	organelle
GO:0043227	C	membrane-bounded organelle
GO:0043229	C	intracellular organelle
GO:0043933	P	macromolecular complex subunit organization
GO:0044085	P	cellular component biogenesis
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044424	C	intracellular part
GO:0044444	C	cytoplasmic part
GO:0044464	C	cell part
GO:0046483	P	heterocycle metabolic process
GO:0048364	P	root development
GO:0048367	P	shoot system development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050896	P	response to stimulus
GO:0065003	P	macromolecular complex assembly
GO:0070925	P	organelle assembly
GO:0071704	P	organic substance metabolic process
GO:0071826	P	ribonucleoprotein complex subunit organization
GO:0071840	P	cellular component organization or biogenesis
GO:0090304	P	nucleic acid metabolic process
GO:0097159	F	organic cyclic compound binding
GO:0099402	P	plant organ development
GO:1901360	P	organic cyclic compound metabolic process
GO:1901363	F	heterocyclic compound binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K15032	MTERFD; mTERF domain-containing protein, mitochondrial	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network