result

Gene information

Detail information of g43983


Location
GeneChrStartEndStrand
g43983Scaffold_26560:HRSCAF_2352709483396170+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrPKA52591.11.4e-68Transcription factor GAMYB
SwissprotO80883.13.0e-55Protein ABNORMAL SHOOT 7
trEMBLA0A2I0AAM71.0e-68Transcription factor GAMYB

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G32460.174.423e-57 219ATM1;ATMYB101;MYB101myb domain protein 101

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag43983.t1
Allium fistulosumAfisC7G02790
Allium sativum
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF00249.28Myb_DNA-bindingDomain368356.61.9e-15
PF00249.28Myb_DNA-bindingDomain8913256.61.9e-15

Gene Ontology
AccessionOntologyName
GO:0000003Preproduction
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0000981FRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0000988Ftranscription factor activity, protein binding
GO:0000989Ftranscription factor activity, transcription factor binding
GO:0001067Fregulatory region nucleic acid binding
GO:0001076Ftranscription factor activity, RNA polymerase II transcription factor binding
GO:0001101Presponse to acid chemical
GO:0001134Ftranscription factor activity, transcription factor recruiting
GO:0001135Ftranscription factor activity, RNA polymerase II transcription factor recruiting
GO:0001558Pregulation of cell growth
GO:0003006Pdevelopmental process involved in reproduction
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0007165Psignal transduction
GO:0007033Pvacuole organization
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0043231Cintracellular membrane-bounded organelle
GO:0006355Pregulation of transcription, DNA-templated
GO:0006357Pregulation of transcription from RNA polymerase II promoter
GO:0006996Porganelle organization
GO:0007154Pcell communication
GO:0007275Pmulticellular organism development
GO:0007276Pgamete generation
GO:0008150Pbiological_process
GO:0009555Ppollen development
GO:0009719Presponse to endogenous stimulus
GO:0009725Presponse to hormone
GO:0009739Presponse to gibberellin
GO:0009740Pgibberellic acid mediated signaling pathway
GO:0009755Phormone-mediated signaling pathway
GO:0009787Pregulation of abscisic acid-activated signaling pathway
GO:0009789Ppositive regulation of abscisic acid-activated signaling pathway
GO:0009889Pregulation of biosynthetic process
GO:0009891Ppositive regulation of biosynthetic process
GO:0009893Ppositive regulation of metabolic process
GO:0009966Pregulation of signal transduction
GO:0009967Ppositive regulation of signal transduction
GO:0009987Pcellular process
GO:0010033Presponse to organic substance
GO:0010468Pregulation of gene expression
GO:0010476Pgibberellin mediated signaling pathway
GO:0010556Pregulation of macromolecule biosynthetic process
GO:0010557Ppositive regulation of macromolecule biosynthetic process
GO:0010604Ppositive regulation of macromolecule metabolic process
GO:0010628Ppositive regulation of gene expression
GO:0010646Pregulation of cell communication
GO:0010647Ppositive regulation of cell communication
GO:0010769Pregulation of cell morphogenesis involved in differentiation
GO:0044212Ftranscription regulatory region DNA binding
GO:0010941Pregulation of cell death
GO:0010942Ppositive regulation of cell death
GO:0016043Pcellular component organization
GO:0045935Ppositive regulation of nucleobase-containing compound metabolic process
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0019953Psexual reproduction
GO:0022412Pcellular process involved in reproduction in multicellular organism
GO:0022414Preproductive process
GO:0022603Pregulation of anatomical structure morphogenesis
GO:0022604Pregulation of cell morphogenesis
GO:0023052Psignaling
GO:0070887Pcellular response to chemical stimulus
GO:0023051Pregulation of signaling
GO:0023056Ppositive regulation of signaling
GO:0030154Pcell differentiation
GO:0031323Pregulation of cellular metabolic process
GO:0031325Ppositive regulation of cellular metabolic process
GO:0031326Pregulation of cellular biosynthetic process
GO:0031328Ppositive regulation of cellular biosynthetic process
GO:0032501Pmulticellular organismal process
GO:0032502Pdevelopmental process
GO:0032504Pmulticellular organism reproduction
GO:0032870Pcellular response to hormone stimulus
GO:0033993Presponse to lipid
GO:0040008Pregulation of growth
GO:0042221Presponse to chemical
GO:0042995Ccell projection
GO:0043067Pregulation of programmed cell death
GO:0043068Ppositive regulation of programmed cell death
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0043565Fsequence-specific DNA binding
GO:0043900Pregulation of multi-organism process
GO:0044424Cintracellular part
GO:0044464Ccell part
GO:0044703Pmulti-organism reproductive process
GO:0045595Pregulation of cell differentiation
GO:0048229Pgametophyte development
GO:0048232Pmale gamete generation
GO:0048235Ppollen sperm cell differentiation
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0048584Ppositive regulation of response to stimulus
GO:0048609Pmulticellular organismal reproductive process
GO:0048638Pregulation of developmental growth
GO:0048831Pregulation of shoot system development
GO:0048856Panatomical structure development
GO:0048869Pcellular developmental process
GO:0050789Pregulation of biological process
GO:0050793Pregulation of developmental process
GO:0050794Pregulation of cellular process
GO:0050896Presponse to stimulus
GO:0051128Pregulation of cellular component organization
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051173Ppositive regulation of nitrogen compound metabolic process
GO:0051239Pregulation of multicellular organismal process
GO:0051252Pregulation of RNA metabolic process
GO:0051254Ppositive regulation of RNA metabolic process
GO:0051510Pregulation of unidimensional cell growth
GO:0051704Pmulti-organism process
GO:0051716Pcellular response to stimulus
GO:0055046Pmicrogametogenesis
GO:0060255Pregulation of macromolecule metabolic process
GO:0060284Pregulation of cell development
GO:0065007Pbiological regulation
GO:0071229Pcellular response to acid chemical
GO:0071310Pcellular response to organic substance
GO:0071370Pcellular response to gibberellin stimulus
GO:0071396Pcellular response to lipid
GO:0071495Pcellular response to endogenous stimulus
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0080092Pregulation of pollen tube growth
GO:0090406Cpollen tube
GO:0097159Forganic cyclic compound binding
GO:1900618Pregulation of shoot system morphogenesis
GO:1901363Fheterocyclic compound binding
GO:1901371Pregulation of leaf morphogenesis
GO:1901419Pregulation of response to alcohol
GO:1901421Ppositive regulation of response to alcohol
GO:1901700Presponse to oxygen-containing compound
GO:1901701Pcellular response to oxygen-containing compound
GO:1902680Ppositive regulation of RNA biosynthetic process
GO:1903506Pregulation of nucleic acid-templated transcription
GO:1903508Ppositive regulation of nucleic acid-templated transcription
GO:1990019Pprotein storage vacuole organization
GO:2000024Pregulation of leaf development
GO:2000026Pregulation of multicellular organismal development
GO:2000112Pregulation of cellular macromolecule biosynthetic process
GO:2000241Pregulation of reproductive process
GO:2001141Pregulation of RNA biosynthetic process
GO:0120025
GO:0140110
GO:1905421
GO:1905957
GO:1905959

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K09422MYBP; transcription factor MYB, plantEC:- --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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