result

Gene information

Detail information of g440789

Location

Gene	Chr	Start	End	Strand
g440789	Scaffold_81413:HRSCAF_464499	384298	390031	-

Sequences

CDS

Protein

Gene

>g440789.t1
ATGGCTTCTCCTCCGACAACTGCACCTTCATCAAACTCCACATCTCCATCATCCACACCTCCTGATACATCACCCCCGCCTCCTGATACATCACCTCCACCACCTAAGACATCACCTCCTCCAGCTCAATCTCCACCACCACCATCACCACCTCCTCCATCATCACCTCTTGCTCCTCCTCCTCCTTCAAATAGTAACTCTCCTCCTCCACCTCCTCATTCAAGCAAACAAAGCCCCCCATCATTGACCCCTCCACCGCCAAAAGCAGGAGCAAAATCTTCACCTTCAGGTGAGGTCAGAGTTAGGATCGATGGAATGCTTAATTCAATGTGGTTTTAGGTTAATGAATAATGAATATTCTTTCAAAAGCTTGTTCTAAAGAAAATTTTAATGAGATAACTTTATATATTTTTTAAGCGTCCAACTGATTTTTCTGTACTGGTACAGTGGCAAGATCATGGCGGTGTTTGAATGCATTTTTTTTTCATTTCATTCTACGGTTTAAGTTGGAGAAAAATATGATTTGGCCTTACTTTGGTCAAAGTGCTTTTCAAGACTTGCGTACCTTGAATTGTAAAAAGATGGCAAACATCAGTTTTTTCTTTTGATTATTTAACAAATAATAGTTTTGCTTGAATCACTGTAGATAATTTGTATGTAATGTGATAATGTGTTGGTCTTATCAAGGTGTAAGTAATTGAGTTTGACACAATTAACAAGTTTTTTTTTCCAAATAACTAAGCTTGTGTAAAGTTTAAACTAAAAAAAATACGCACGGAACCCACCACAAATAAATCATAGGTTGTTATGCCTAAGGTCCTTCGACTGTTATCAAAGTTCGAATTCATGACATTTCGTTTAAGCCTGGTACGTAACGATTGCAGACATAACACCAACAAGACAAAATGTATCAAAAAGATGATTTTTATTTACTTTATCTTGCTGAATTTTCACAATGCCATTCTTACAGGTTTACAAATGTATCGCTTTAAAATCTTATTCCAAAAGAAGTCTACTTTTGAAACTTATAATGAGAGAGACCAGTCTGCATATCTTTGGTTATAATGCTTAAGTACTTTTAATTGTAGCAAGAAGGCGAACATCAGTTATTTCTTTTGATTGTTAAGCACGCTATATGTAATTCGTAGTCTTTCTACCCTTTATTTGGTCTTAACAAGGTGCAAGTAATTAGGCTGGTAAAATTCACGATGCAACTAACAATTCATTTTGTTTTCTTTATCTTGTTGAATTTAGCATTGCCACTCTTACAGGTAATAAAAGCTCACATAAGTCATCACACTCATCAGACGGTGGAAGTGGTTCAAAACAATCACCAGCAAAACAAGATGATAATCTTAACATAAACGGACCGATTGTTATAGGAATCATTGCAGGAGTTCTGCTATTCTTTATTTTGCTCCTGGCCTCCGCATTAGCTTGCTGTTGCAGGAAGAAAAGAAGCAAGAAGCATGTTGCATATTATGATACTAGAGGGAACAAAGGTATTACTGCTATTATAAAACTAAGCTGTAACTTCTAACACCTGTATTATTTCACTGAGTAAACAGTACATTACACAGGTCAATACAGTAGTCCTCCAGTGTGGCAATCGCATGGGATGGACCACAACATAAAGATCCCCCCACCACCAGGCCTGATACCACCGCCACCTGTCAGTGGTGGATGGCAACCTCATGGACCTCCTGCTCCATTAAGTGGTGAAATGAGTTCCAATTACTCTGGGCCTCACGGTACTGCTTTGCCACCACCGTCACCCACACTTTCTTTAGGGTTCAACAAAAGTACCTTCAATTACGAAGAGCTAGCTGCTGCCGCCAGTGGGTTTTCACAATCAAATATGCTTGGTCAAGGTGGGTTTGGATATGTATATAAAGGCATTCTTCCGAATGGTAAAGAAGTGGCGATTAAGCAGTTAAAGGCTGGAAGTGGGCAAGGAGAGAGGGAGTTTCAGGCTGAGGTTGAAATCATTAGTAGAGTTCACCATCGGCATCTTGTGTCACTTGTTGGGTATTGTATTGCTGGAGATCAGAGGCTTCTCGTTTATGAGTTTGTTCCAAATAAGACTCTTGAGTATCATCTCCATGGTTAGTTAGATTCGATGGTAGCCCGCCACTTGGTAGAAGTTTTTGTTTTTGAATTTGATTATTTTTGGTTGCATTTACATTTTTATAGGAAACGGGGTCCCAACAATGGATTGGCCTACAAGGCTTAAAATAGCCATTGGTGCTGCAAAAGGACTTGCATATTTGCATGAAGATTGTGAGAGCCTAAACATCAAATTTTTATTCATTTACTAGTTATGATTTCTTTTTATCACTTCCATTCTGATACTAACTGTGTTCTGAACTATTACGATGAAGGCCATCCACGAATCATCCATCGTGACATTAAAACAGCAAACATTTTGCTCGATTACAAGTTTGAAGCTATGGTATATTTTCAGAATGATAATATTTCACAGGCCTACCGCTGAAAATCCATATAATTGATTGATTCACACTTTTAACAGGTCGCAGACTTTGGTTTGGCAAAGTTGTCTTCCGATACCAACACTCATGTTTCAACACGTATTATGGGAACTTTTGGGTGAGCCATTTCAATAACCAATTTTTTTAAAGCAACTCAAGAATAAGATGCATGTTAGCTCCAAAATTATACTAATGCCGTTTTTTTTTTTTCTTGGAAAAGGTATTTGGCTCCTGAGTATGCATCGAGCGGTAAGCTTACAGATAAATCTGATGTGTTCTCATATGGCGTTATGCTTCTGGAGCTTATAACTGGGCGCAAACCTGTTGATCATACAAATAGAATGGAGGATAGTTTAGTGGATTGGGTTGGTTATAATATTTTTGTTCTCTCTTTACAGAGTTTACAAGTAGCTGGATGCTTGCAAAAGAAATCTAACTGAGGCTGCTCTTGTGACAGGCAAGGCCTATATTAGGGCAGATATTGGCTGAAGAGAGATACGATGAGTTGGTGGATCCAAGGCTTGAAGGAAAGTATAACAAAATTGAAATGCACCGCATGATAACATGTGCTGCTGCTTCTGTTCGTCATTCTGGAAGAAGACGACCTAGAATGAGCCAGGTAAAAATTTCTTTTGGAATTGCTACAATGGAGTTAGAGGATTTGGTACAATTTGATTTGAAAAGGAAATATCATTTCCACTTAATCAACTTATTAGTAAAACCATATTCCTACAGTGAGCGAGTCGTCTATTGATACCCTTGTACATTGTACCCTTTTCCCTGTAACCTGAGTGTTCAGCTTCTTAGCATTAATTAACCTAACCACAGATCATGTCTTTGATAAAATGTAAATGCGGGTTTCGAGTTTATGACGCTTATTTGAAGTTTTAGTAAAATATATCTGCATCTACCTGATGGATTAAAGCCTAAGCTTCTGATTATCATTGTTTTATCCCCTACTCAAATATGAACCTGACCGGTGTTCAACTTAGGTTATTTAGCATGCAACTGTTGCCTTTGTTGCTGCACTGTAATCTTTATAGTTGAATGAGAGGATACTTTCGAGGTTAATAACAGCCCTTGTTTCCATGAAATAAGCAAAGTGCATCCCGATGGAGTCTTTTTTAATTTTAATCGAATAATAACACTCACAAGATATGCAACGTGCCATCTTTGGTATTAATACCTCAAAAATGACTACTAAGTAGCCAACAGTGGCTATTCGGTATTAATGACTTACCAGATACTTTGAATATCAGATAAGTCTATCTATGTTTTTAATGTCATTTCTATCGAGTTTTATAATTTTATTTATATTAACAGTGACTATTCGGTATTAATGACTTACCATATACTTTGAATTTCAGATAAGTCGTTTTATGTTTTTCAGCGTCATTTCTACAGAGTTTTCTATTTTATATTTATTTATTTTATTATGTTTAGTTGTATTTTATATATGTTTATTTACATTTCGATATGTTTATTATGTTTTGCGCATTCTATCAGTTATTTTTTTTAATTTTTTTGTATATTCATTATTAACTATATTTTTGTTCCTTTTTCATCCATATATTAGTGTTTGCAACCCATGGAAAATACTAGGAACAAAATAAAACACAACATAGAATTAAGGAACATTCTATTAGGCCACAAATTAATAATACAATTTATGATACAATAAAGCTCAGATGTTGAATTTTATTTTGTTGTTAGATGTGATAAAAAGATCCACCATTGGAAATCCATTGTGACACCAATTGTATCCAAATTTGAGTCATCGCAGTCACTCTCTAGAATGAAACACTGCATTAATTTTTATTTCTGCGTCCCTTTTTCACTCTTCCAACTGAACTCTTACCTTATTTTACATCTATCTTTCCCATCTTTTCCTAATATACATTTCAGTTTTAATTATTTTTGTTTTTAATTTTCTTGATTAAATATTCTATGAATTATGAATCATTTTCCTCCATCGTCAAGGATGGTATAATTCAATTTGTAATAATAAATAAGGTAAATATAAATGTAGTTGGCAGGGGCAAACCTGTCAGAACTAGCATTGACAAACTCCGTTATTCGTTTTCTCTTGGGCGATTAATGCTTTGACATGTGTTGTTGAAAAGGATTTAACTTCATTTTGACTTCTATGGTTGCAGCTTTCCATTGTTTATTTCGAGTTTGATATTGTCCATTTTCCATTTTGGGTTTTTTTAAATGTCAAAAGAAGACCGGCGATTTTTCGTATGTTGACTTATACGATGTTCTAAATATCGGATAAGTCAATACGTCTAATACCAATGGCTGGGGTGGTTGGAACTTGGAAGTAGGATTAATATCCTCAAACGACTCACTATGGTTTTGCTCTTATAGAGAGGAAAATATTGTACCAAGAAAAATATCAACCAAAAGAAGAAAATCCTAAGAAAGGATGACCAGTCACACAAATTGCCACCTTAGAGCCTCACAAATTCAATTTTGAATTCAGAAATAAATTATAAACAATTTCTCAACACAAGAGTAATACAATTCCACCAACACATTTTACTCAACTACACCAGCACAGATACACTTGCACGCTTTCACAGCGATACATAACTCGAACAGCTAGACAATATCATACTGATGGCCAACACAAGTGCGGACACTTACTTTTGCATAATTGTATTCAGCATAAATCCATATTTTGATATCTCCTTTTAGGTATGGTAGACTTTGGTACTATCTCATCCTTTTAAGCATTATCTTAGGTTTCAACCGTTACGTGGTTTGTATAAAAATCCCTGTGTAAAGAGTAATTTCCAATGATTCTACAATATGACATAAGACCAAAGCTCGGCTTGTGTATTAAGTTGGCTAGAGTACACACGCTGTTATTTTTGCAATCATTTATCACATTACCAATTAATTGATTGTGTGACAATAAGTTGTCTTATTATACATGTGAAATGAATCTAATGTTTTTGATGTAGATTGTGCGAGCACTTGAAGGCGATACAATATCATTCGAAGACATAAGCGAAGGGGCAAAGTCGTCGGGACAAAGCGCAGTATTCTCAAGCTCGGGCTCAGAGTTAGAATCAGGTACATACTCTTCAAAAATGAGGCACTTCAACAAAATAGCATTGGCCAGCGGAGAGTATACAGGAGAATACAGTGGCGTCACCAGTGAATATGGGCGTAACCCTTCAGAGTCAAGCAGTTCTGGAGAAATGCATTTTGCTTCAGGGAGGAAGCCTCGAATATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244206.1	5.6e-194	putative proline-rich receptor-like protein kinase PERK6
Swissprot	Q9ZNQ8.1	8.8e-152	Proline-rich extensin-like receptor kinase 4
trEMBL	A0A5P1FDR5	9.0e-186	Protein kinase domain-containing protein (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G18470.1	60.55	5e-162	568	AtPERK4;PERK4	roline-rich extensin-like receptor kinase 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
g440789	AT2G18470.1	474	162	6	126	586	147	608	60.55	5e-162	568
g440789	AT4G34440.1	614	245	13	24	620	83	670	53.09	1e-160	563
g440789	AT3G24550.1	382	112	5	233	609	251	630	68.85	5e-155	545

Ortholog group

Species	Genes
Allium cepa	g440789.t1
Allium fistulosum	AfisC2G05929
Allium sativum	Asa6G03260.1
Arabidopsis thaliana	AT2G18470.1
Oryza sativa	LOC_Os07g04520.1; LOC_Os10g01560.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	263	475	155.2	1.8e-45

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005575	C	cellular_component
GO:0001101	P	response to acid chemical
GO:0008152	P	metabolic process
GO:0003674	F	molecular_function
GO:0016020	C	membrane
GO:0003824	F	catalytic activity
GO:0004672	F	protein kinase activity
GO:0004674	F	protein serine/threonine kinase activity
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0007165	P	signal transduction
GO:0035556	P	intracellular signal transduction
GO:0007178	P	transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0005623	C	cell
GO:0006464	P	cellular protein modification process
GO:0006468	P	protein phosphorylation
GO:0006793	P	phosphorus metabolic process
GO:0006796	P	phosphate-containing compound metabolic process
GO:0006807	P	nitrogen compound metabolic process
GO:0007154	P	cell communication
GO:0007166	P	cell surface receptor signaling pathway
GO:0007167	P	enzyme linked receptor protein signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0007275	P	multicellular organism development
GO:0008150	P	biological_process
GO:0009719	P	response to endogenous stimulus
GO:0009725	P	response to hormone
GO:0009737	P	response to abscisic acid
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009755	P	hormone-mediated signaling pathway
GO:0009791	P	post-embryonic development
GO:0009845	P	seed germination
GO:0009987	P	cellular process
GO:0010033	P	response to organic substance
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0016772	F	transferase activity, transferring phosphorus-containing groups
GO:0016773	F	phosphotransferase activity, alcohol group as acceptor
GO:0019199	F	transmembrane receptor protein kinase activity
GO:0019538	P	protein metabolic process
GO:0019932	P	second-messenger-mediated signaling
GO:0022622	P	root system development
GO:0023052	P	signaling
GO:0070887	P	cellular response to chemical stimulus
GO:0032501	P	multicellular organismal process
GO:0032502	P	developmental process
GO:0032870	P	cellular response to hormone stimulus
GO:0033993	P	response to lipid
GO:0036211	P	protein modification process
GO:0038023	F	signaling receptor activity
GO:0042221	P	response to chemical
GO:0043170	P	macromolecule metabolic process
GO:0043412	P	macromolecule modification
GO:0044237	P	cellular metabolic process
GO:0044238	P	primary metabolic process
GO:0044260	P	cellular macromolecule metabolic process
GO:0044267	P	cellular protein metabolic process
GO:0044464	C	cell part
GO:0048364	P	root development
GO:0048731	P	system development
GO:0048856	P	anatomical structure development
GO:0050789	P	regulation of biological process
GO:0050794	P	regulation of cellular process
GO:0050896	P	response to stimulus
GO:0051716	P	cellular response to stimulus
GO:0060089	F	molecular transducer activity
GO:0065007	P	biological regulation
GO:0071215	P	cellular response to abscisic acid stimulus
GO:0071229	P	cellular response to acid chemical
GO:0071310	P	cellular response to organic substance
GO:0071396	P	cellular response to lipid
GO:0071495	P	cellular response to endogenous stimulus
GO:0071704	P	organic substance metabolic process
GO:0071944	C	cell periphery
GO:0090351	P	seedling development
GO:0097305	P	response to alcohol
GO:0097306	P	cellular response to alcohol
GO:0099402	P	plant organ development
GO:1901564	P	organonitrogen compound metabolic process
GO:1901700	P	response to oxygen-containing compound
GO:1901701	P	cellular response to oxygen-containing compound
GO:0140096

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K04733	IRAK4; interleukin-1 receptor-associated kinase 4	EC:2.7.11.1	MAPK signaling pathway	ko04010
			NF-kappa B signaling pathway	ko04064
			Toll-like receptor signaling pathway	ko04620
			Toll and Imd signaling pathway	ko04624
			NOD-like receptor signaling pathway	ko04621
			Neurotrophin signaling pathway	ko04722

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network