result

Gene information

Detail information of g441759


Location
GeneChrStartEndStrand
g441759Scaffold_81488:HRSCAF_4645745492968944+



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrONK56884.10.0e+00uncharacterized protein A4U43_C10F14150
SwissprotQ6EVK6.10.0e+00Protein CHROMATIN REMODELING 2
trEMBLA0A5P1E2P60.0e+00ATP-dependent helicase BRM

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score		gene aliasesShort description
AT2G46020.255.880.02083ATBRM;BRM;CHA2;CHR2transcription regulatory protein SNF2, putative

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag441759.t1
Allium fistulosumAfisC1G04374
Allium sativumAsa7G04527.1
Arabidopsis thalianaAT2G46020.1; AT2G46020.2
Oryza sativaLOC_Os02g02290.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF08880.8QLQDomain36039339.62.9e-10
PF00176.20SNF2_NFamily8871183215.66.8e-64
PF00271.28Helicase_CFamily1206131659.33.8e-16
PF00439.22BromodomainDomain1812185224.81.5e-05

Gene Ontology
AccessionOntologyName
GO:0051276Pchromosome organization
GO:0005622Cintracellular
GO:0005575Ccellular_component
GO:0003674Fmolecular_function
GO:0003676Fnucleic acid binding
GO:0003677FDNA binding
GO:0003682Fchromatin binding
GO:0005829Ccytosol
GO:0005488Fbinding
GO:0005623Ccell
GO:0005634Cnucleus
GO:0005737Ccytoplasm
GO:0043231Cintracellular membrane-bounded organelle
GO:0006325Pchromatin organization
GO:0006338Pchromatin remodeling
GO:0006996Porganelle organization
GO:0009653Panatomical structure morphogenesis
GO:0008150Pbiological_process
GO:0009987Pcellular process
GO:0010199Porgan boundary specification between lateral organs and the meristem
GO:0010468Pregulation of gene expression
GO:0048646Panatomical structure formation involved in morphogenesis
GO:0016043Pcellular component organization
GO:0019219Pregulation of nucleobase-containing compound metabolic process
GO:0019222Pregulation of metabolic process
GO:0031323Pregulation of cellular metabolic process
GO:0032502Pdevelopmental process
GO:0040029Pregulation of gene expression, epigenetic
GO:0043044PATP-dependent chromatin remodeling
GO:0043226Corganelle
GO:0043227Cmembrane-bounded organelle
GO:0043229Cintracellular organelle
GO:0044424Cintracellular part
GO:0044444Ccytoplasmic part
GO:0044464Ccell part
GO:0048518Ppositive regulation of biological process
GO:0048522Ppositive regulation of cellular process
GO:0048583Pregulation of response to stimulus
GO:0048584Ppositive regulation of response to stimulus
GO:0048856Panatomical structure development
GO:0048859Pformation of anatomical boundary
GO:0050789Pregulation of biological process
GO:0050794Pregulation of cellular process
GO:0051171Pregulation of nitrogen compound metabolic process
GO:0051252Pregulation of RNA metabolic process
GO:0060147Pregulation of posttranscriptional gene silencing
GO:0060255Pregulation of macromolecule metabolic process
GO:0060964Pregulation of gene silencing by miRNA
GO:0060966Pregulation of gene silencing by RNA
GO:0060968Pregulation of gene silencing
GO:0065007Pbiological regulation
GO:0070920Pregulation of production of small RNA involved in gene silencing by RNA
GO:0071840Pcellular component organization or biogenesis
GO:0080090Pregulation of primary metabolic process
GO:0080134Pregulation of response to stress
GO:0080135Pregulation of cellular response to stress
GO:0097159Forganic cyclic compound binding
GO:1900034Pregulation of cellular response to heat
GO:1900036Ppositive regulation of cellular response to heat
GO:1901363Fheterocyclic compound binding
GO:1903798Pregulation of production of miRNAs involved in gene silencing by miRNA
GO:0090691

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11647SMARCA2_4; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4EC:3.6.4.- Thermogenesisko04714

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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